| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_8589 |
|---|
| Symbol | |
|---|
| ID | 8339971 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 9959464 |
|---|
| End bp | 9960672 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644961674 |
|---|
| Product | transcriptional regulator, XRE family |
|---|
| Protein accession | YP_003119249 |
|---|
| Protein GI | 256397685 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00719609 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.402307 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACC GCACCGGTGA GCGGGTCAGG TACTGGCGCA TAAGACGCGG GCTCGACCGG
ACGACATTCG CTTCCCGCGT CGAACGGTCG CCTTCCTGGG TCAAGGCCAT CGAGAACGGC
CAACGCGAAC TCACACGGCT GCCGCTTTTG GAGCGCGTAG CGCAGGCGCT CGGGGTGACC
GTCCAAGCTC TCACCGATCC GGTGGAAGCC GAGCGAGCGA CCCGCACGCC GGATGCTGCG
GAAATCGCCG CGATCACCGG CGCCTTGGAG CACTACGAGG TGATACTCGG GGCACCAGTG
AACGCTCTTG AACATCCCCA GCCAGCCGAC CTCGCCAAGA GGGTCAACTT CCTCGACGAA
GCCTTCCTGG CCTCGCGGTT CTCCAGCATC GGCCGCGACC TGCCCAAGCT GTTGATCGAG
GCACAACGTG CGGCGAAGGG ACAACCAGGT ATCGATTCCA TCCGGGTGCT CGTCAAGGTG
TACCGGATCG CGAGCTCGAC CTTGTTGAAG CTTGGCGCGG ATCAGACTGC GTGGCTGGCT
GCGGACCGAG GGATGGTCGC GGCCCAGGCC ACGGACGACC TGTACACCCT TGCCCGCGCT
ACCCGCGCGG TGTCGCGCGC GATGACCAAT CTCGGTCGTA CCGAGGCCGC GCTGGATGCC
CTGTTGGCGA TGGCTGCACG GATGCAGCCA GAGGTCGCCA CGTCGACGCT CGAAGTTGCC
GCGATGTACG GCATGGTGCT GCTCGCGGCA GAGATCGCGG CAGCGAAGTA CGGCGACGCA
CACACCGCAT TGGCGATGCA CAACGAAGCG AGCGAAGTCG CGCAGTGGCG CTTCGCGTCC
GGCGCAAGCG ACAAAGAGAC GGCATTCGGG CCAACTAATG TCGACCTGCA CCGGGTGTCC
GCACTGGTTC GTCTCGGTCG TCCAGGCGAG GCGGTGCAAC ACGCAGATGG CATCGACCGC
GCCGCTGTGG CGCTGATGCC GCGCGAGCGA CGCGGGACGT TCGGCCTCGA TCTCTCGTTG
GCCTACCACC AACTCGGCCG CTACACCGAG GCGGAGACTG TTCTGCTGGC CGCCGAGCGG
ATCGCGCCAG AGGAGGCGAG GTGTCGGCCT GGAAGCAAGT CTCTGATCGC TGATCTGGTC
AACGCGCCGA GCCGTAACCC GAGTGCCGAC CTGCGTGCTC TCGCCCGCCG TGCTGGAGTA
CAAGCGTGA
|
|---|
| Protein sequence | MSNRTGERVR YWRIRRGLDR TTFASRVERS PSWVKAIENG QRELTRLPLL ERVAQALGVT
VQALTDPVEA ERATRTPDAA EIAAITGALE HYEVILGAPV NALEHPQPAD LAKRVNFLDE
AFLASRFSSI GRDLPKLLIE AQRAAKGQPG IDSIRVLVKV YRIASSTLLK LGADQTAWLA
ADRGMVAAQA TDDLYTLARA TRAVSRAMTN LGRTEAALDA LLAMAARMQP EVATSTLEVA
AMYGMVLLAA EIAAAKYGDA HTALAMHNEA SEVAQWRFAS GASDKETAFG PTNVDLHRVS
ALVRLGRPGE AVQHADGIDR AAVALMPRER RGTFGLDLSL AYHQLGRYTE AETVLLAAER
IAPEEARCRP GSKSLIADLV NAPSRNPSAD LRALARRAGV QA
|
|---|
| |