Gene Caci_8450 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_8450 
Symbol 
ID8339830 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp9781282 
End bp9781623 
Gene Length342 bp 
Protein Length113 aa 
Translation table11 
GC content67% 
IMG OID644961537 
Productanti-sigma-factor antagonist 
Protein accessionYP_003119114 
Protein GI256397550 
COG category[T] Signal transduction mechanisms 
COG ID[COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) 
TIGRFAM ID[TIGR00377] anti-anti-sigma factor 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.000560985 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGGACCTGA AGCTGGAGAC GCGAGACGAG AACGGCCGGA CGATCGTCAA GGTCGGCGGG 
GAGATCGACG TGTACACCGC CCCGAAGCTC CGGGAACAGC TGGTCGAGCT GGTCGGCGCC
GGGAAGTACC ACCTGATCGT GGACATGGAG GACGTCGACT TCCTGGACTC GACCGGGCTG
GGCGTCCTGG TCGGCGGGCT CAAGCGGGTC CGCGCGCACG ACGGTTCGCT GCGCCTGGTG
TGCACCCAGG AGCGGATCCT GAAGATCTTC CGGATCACCG GCCTGACCAA GGTTTTCCCG
ATCAGCGACA GCGTGGAGCA GGCCGTCACC GCCGTCGACT AG
 
Protein sequence
MDLKLETRDE NGRTIVKVGG EIDVYTAPKL REQLVELVGA GKYHLIVDME DVDFLDSTGL 
GVLVGGLKRV RAHDGSLRLV CTQERILKIF RITGLTKVFP ISDSVEQAVT AVD