| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_8441 |
|---|
| Symbol | |
|---|
| ID | 8339821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 9769469 |
|---|
| End bp | 9770737 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 644961528 |
|---|
| Product | NLP/P60 protein |
|---|
| Protein accession | YP_003119105 |
|---|
| Protein GI | 256397541 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.150929 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGGTC GCGGGCACGG CCGGCGGGCG ACGCTCGTCA CGGCCACGGT CCTGACCGTG
GCGCTGCTCG GTGCCGCGGC GCATGCCGAC CCGGGAACCC CGGTGGTCCC CGGCCAGGGC
GACATCGACC GGGCCAAGGC CGCCGTCAGC GACCGGCAGT CGGCCGCGGC CCAGATCCAG
CAGGCGCTGG ACGCGGCGAA CGGCCGCCTG CACTCGCTCC AGGCGCGCGC CGGGCTGGCG
GCGGAGGCGT ACGACACCGC CGTGGCGCAG GCGGCGGCCG CGGCGCGGGC CGCCGACGCC
GCCCGGACCC GCGCCGCGAC CACGCTGGAC GCGCAGCACC AGGCCGAGCA GCGGCTCGGC
GCCTTCGCCG CCGCGACGTA CCGGCAGGGC CCGGACATGG CGGCGGCGCT GACGCTGCTG
CGCGCCGGCT CGCTTCACGA CTTCGCCGTC CAGCGGCAGG CGCTGGCGAA CCACGACGCC
GCCGAGGCGC TGGCGGTGAC CGACGCCCGG CAGGCGACGA CGGCCGCGAC GGCGGCTCGC
CGCGGCGCCG ACCAGACGGC GGCCGAGCAG CGGCGCGCGG AGGCGCAGGC GCAGAGCGCG
CTGGGCGCGG CGCGGACGGC GGCGTCCGAC GCGCAGAGCC AGGTCGCGGG CATCCAGGCG
CAGCAGGACG GGCTGCTGCG GCAGCTGGCG GCGGCGCAGG GCGTCGAGGT CGGGCTGGAG
CGGCAGCGCG AGGCCGGGCT GGCGGCGCTC GCGGCGCAGC AGGCGGCGGC TCGGCAGGCG
GCAGCGGCTG CGGCGTCCCC TGCCGGGGCG GGGCACACGC AGTCGCATAC CTCGTCGAAC
GGCCGTGGCG GGACGTGGAC GCCGAGCGCT TCGGTGTCGG CGGGTCCCGT GCCGTACGCC
CAAGGCGCCG TCCGCCAGAT GCTGGCCTAC ATCTACGCGC AGCTCGGCAA GCCCTACGTC
TGGGGCGGCG CGGGTCCGGA CGTCTTCGAC TGCTCAGGCC TGGCGATGCG CGGTCTGGAA
GCCGGCGGCT GGTCCTTCCC GCACCCGGCG CAGTGGCAGT ACCTGGCGAT GCACTCGCTC
AGCTACAACC AGCTCCGGCC CGGCGACCTG GTCTTCTGGG CCGAGGATCC CAGCGACCCG
CACACCATCT ACCACGAGGC GATCTTCATC GGGAACGACC GCATCATCCA GGCGCCGCAC
CCCGGCGGCG TGGTCGAGCA GCAGTCGCTG TGGATCAACG GCCCGCCCAG CTTCTACGGA
CGGCCGTGA
|
|---|
| Protein sequence | MRGRGHGRRA TLVTATVLTV ALLGAAAHAD PGTPVVPGQG DIDRAKAAVS DRQSAAAQIQ
QALDAANGRL HSLQARAGLA AEAYDTAVAQ AAAAARAADA ARTRAATTLD AQHQAEQRLG
AFAAATYRQG PDMAAALTLL RAGSLHDFAV QRQALANHDA AEALAVTDAR QATTAATAAR
RGADQTAAEQ RRAEAQAQSA LGAARTAASD AQSQVAGIQA QQDGLLRQLA AAQGVEVGLE
RQREAGLAAL AAQQAAARQA AAAAASPAGA GHTQSHTSSN GRGGTWTPSA SVSAGPVPYA
QGAVRQMLAY IYAQLGKPYV WGGAGPDVFD CSGLAMRGLE AGGWSFPHPA QWQYLAMHSL
SYNQLRPGDL VFWAEDPSDP HTIYHEAIFI GNDRIIQAPH PGGVVEQQSL WINGPPSFYG
RP
|
|---|
| |