Gene Caci_8391 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_8391 
Symbol 
ID8339770 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp9718493 
End bp9719347 
Gene Length855 bp 
Protein Length284 aa 
Translation table11 
GC content67% 
IMG OID644961477 
ProductPSP1 domain protein 
Protein accessionYP_003119055 
Protein GI256397491 
COG category[S] Function unknown 
COG ID[COG1774] Uncharacterized homolog of PSP1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.143768 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCTGTG CCGTCAGCTT CACCCGCTAC GGCCGTCTCT ATTACTACGC GCCAGGGTCC 
ATCAGCCCGC ACGTCGGCGA CAAGGTACTC GTCCCCACCT CCGCGGGTCC CGAGGTGGCG
GAGTGCATCT GGGCGCCCCA ATGGGTCGAC ACATATGACG ACGCGGGGAT CGGCGGACTG
GACGATCTCG TCGGCTTCGC CACCCCGGAC GACTTGGCGC GCGACGAACG CAGCCGGGAG
CGCCGCGCGC GGGCCCGCGT GGTCGCCAAG CGCCAGATCC GCGAGCAGGG TCTGCCGATG
AAGGTGGTCG GCGTCGACTT CGTGGAGTCG GAGAAGCAGA TCACCGTGTA CTTCTCCGCT
CCGCAGTACG TGGACTTCCG CGAACTGGTG CGGACCCTCG CCCGGGAGTT GGACGCGCGC
ATCGAGCTGC GTCAGCTCGG CGCCCGCGAC GAGGCGCGCA TCCAGGGCGG GATCGGACCG
TGCGGACGGG ACACGTGCTG CTCGACGTTC CTTAAGGACT TCGAGCCTGT GTCGGTACGC
ATGGCCAAGG ACCAGGACCT GCCGGTGAAT CCGTTGAAGA TCTCCGGTGC GTGCGGACGG
CTTATGTGTT GTCTCAAATA TGAGCATCCG CTCTATGTAG AGACCAAGGC CAAGGCTCCC
GCGCGCGGGG AGAAGGTCGT GACACCGGAG GGTCCGGGGC GGGTCGTCGG ACTGAACGTG
CCGTCGGAGA CGGTGAAGGT GCGGCTGGAC GAGACGGGGC GGACGTGCTC CTGCTCGCTC
GCGTCGGTGT GCGGATCGCG GCAGGACTAT GAGGGTTCGC GCAAGGACGG CTCTATGCGG
TGGGACGCGG AGTAA
 
Protein sequence
MICAVSFTRY GRLYYYAPGS ISPHVGDKVL VPTSAGPEVA ECIWAPQWVD TYDDAGIGGL 
DDLVGFATPD DLARDERSRE RRARARVVAK RQIREQGLPM KVVGVDFVES EKQITVYFSA
PQYVDFRELV RTLARELDAR IELRQLGARD EARIQGGIGP CGRDTCCSTF LKDFEPVSVR
MAKDQDLPVN PLKISGACGR LMCCLKYEHP LYVETKAKAP ARGEKVVTPE GPGRVVGLNV
PSETVKVRLD ETGRTCSCSL ASVCGSRQDY EGSRKDGSMR WDAE