| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_8289 |
|---|
| Symbol | |
|---|
| ID | 8339668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 9603492 |
|---|
| End bp | 9606053 |
|---|
| Gene Length | 2562 bp |
|---|
| Protein Length | 853 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644961375 |
|---|
| Product | protein of unknown function DUF214 |
|---|
| Protein accession | YP_003118953 |
|---|
| Protein GI | 256397389 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCACCA TCGCCCTGCG CAACCTCACC GCCCGCCGCC GCCGGCTGAT CGGCACGTTC
CTCGCGGTGT TCCTCGGTGT CGCCTTCCTC GCCGGCACCC TCACGCTGAA CGCGACGCTC
TCGCGCAACT TCGACAACCT CTTCGCGACC GCCGACTCCA ACGTCGCGGC GGTCGTCCAC
TCGGACACGC TGATCGCCTC GAGCGGCAGC GGCGCGCCCT TCGGCGGTCT GCGGGCCTCG
GTCCCGTCGC AGCTCGCTGA TTCGCTGCGC GCCGTGCCCG GCGTCGCCGA CGCGCAGCCC
GACATCACCG GCTACGGTCA GCTGCTCGGC GCCGACGGCA AGGCGGTCGG CGGGAACGGG
CCGCCGCGTA CCGCCGGCAA CTGGATCCCG TCCGCCGCGC TGAACCCGTA CCACCTGGTC
GCGGGGCGCG CGCCGCAGGA CGTGGCGGCT GAGCAGCCGG TGCAGGTCGT GATCAATCGC
GGCGCGGCGA ACTCCGGGCA TCTGAAGATC GGGGACACCA CGATCGTCCA GATGCCGCTG
CCGGTGCGGG TCACGATCGT CGGCATCGCC GGGTTCGGGA CGCAGGACGG GATCGGGCAG
GTGACGTATG CCGGATTCAC GCAGACAGTC GCCGAGAAGT ACATCGCGCG GCCCGGACAG
GCTTCGCAAA TCCTGATCGC TGCCAAGAAG GGTGTGTCTC AGGACACTGT CGTGGACTCG
GTGGCGAAGA CTCTTCCGCC GGGTGTCTCG GCGATCACCG GTGCGGCGTA TACGAAGGCG
AACACGGACG CGATCGGGAA GGCGTTTCTG ACGTTCTTCA AGGGCTTCCT GCTGGTGTTC
GCGGCCGTGG CGCTGCTGGT GGCGGCGTTC TCGATCCACA ACACCTACAC GATCCTCATC
GCGCAGCGGA CGCGCGAGAA CGCCTTGCTG CGCGCGCTCG GCGCATCGCG AGGGCAGATC
TTGCGGTCGT CGTTGGCTGA GGCCGCGGCG TTGGGTTTGG CGGCATCGGC GGTCGGGATC
GTCGGCGGGT TGGGGATCGC GCAAGCGCTG AAGGCGTTGT TCGACGTGGC CGGATTCGCT
TTGCCCGCCG GGGGATTGGC GGTCACGGGC TCGACGATCG CGGTCGCGCT GCTCGTCGGT
GTCGGGGTGA CGTCGCTGGC TGCGCTGTCG CCGGCGGTGC GGGCTTCGCG CGTGCCGCCG
CTCGCGGCGC TGCGGGAGGC GTCGGTGGGG GAGACGAGCT CCGGGTTCGG GCGGGTGCGG
ACGCCGATCG GCGCGGTGCT TCTGGGCGGC GGCATGCTGC TCGCCGTCGC TGGTGGGTCG
CTCGCGGCGG TCGGCGCCGG TGCGGCGGCT ACGACGGTCG GCGTGGTGAT GGTCGGGCCG
GTCGCGGCGC GCGCGGCGGT CCGCGTGCTC GGGTCCGTGG TCACCGGCGA CGGACGCTTG
GCCGGGACGA CCGGCGTCCT GGCGCGGCGC AACGCGGCCC GGGACCCGCG GCGGACCTCG
GCGACGGCTA CCGCGCTGAT GGTCGGGGTC GCGGTGGTGA CGCTGCTGAC GGTGTTCGCC
ACGTCGGTGA AGACGTCGCT GAAGTCTGAT GTGGACCGGT CGTTCGTCGG AGACCTCGCG
GTGTCCTCGC CCGCGTTCGG CGGCGGCGGA TTGAGTCCGC AGCTGGCATC CGATCTGCAG
AAAGTGCCGC GCGTCGCGGC TGCCGTCGGG ATCGGGCAGG GGACGGCTTC GATCAGCGGC
GCGGCGACGA ACGTCTCCTT CGCCGACACC GGAAAGCTGA GCCAAGCGGT GTCGCTGGAC
GTGCGCGGCG GCTCGGCGGC GGCTTTGAGC GGCGGTCACG AGATCGGCGT CTCGGCCTCG
GAGGCGAAGA AGCATCCGCT GGGCAGCTCC GTGACGGTCG TCTTCCCGGA CGGAACGGCC
AGCACGGTGC CGGTCGGCTT CGTCTACGGA CCGCGCGGCT CCCTCGACGG CTACCTGGTC
GACGCCGCCA CCTGGTCCGC ACACGCGAAT CAGGTCACGG ACACCTCGGT GATCGTGAAG
CTGGCGCCGG GGACGTCGGC CGCGGCGGCG CGCTCGGCGA TCACCGCGGC CGTGGTGCCC
TATGGCAGCC CGGACGTGCA GGACCGGCAG CAGTACGCGG ACGCGCAGGC GTCCGGCGTG
GACGTGGTGC TCACGATCTC CTACGTGCTG CTGGTCCTAG CGATCGTGAT CGCCCTGGCA
GGCATCGCGA ACACCCTGGC CCTGTCCGTC CACGAACGCA CCCGTGAACT CGGCCTACTG
CGCGCCGTCG GCCTCACCCG CCCCCAGACC CGAGCCCTGG TCCGCTGGGA ATCGCTCCTG
GTGGCCCTGT TCGGCACCCT GGGCGGCGTC GCCCTCGGCA CCTTCCTCGC CTGGACCCTG
GTCCGAGCCG CCGGCAGCTC CACAGCCATC GGCTTCGCAG CCTCCCCAGC CACACTCCTC
CTGATCCTCG CCGCCGGCGC CGTAGCAGGC GTCGCCGCCG CAGCCCGCCC AGCCCGCCGC
GCAGCCCGCC TGGACCTGCT GGCGGCGATC GCGCAGGAGT GA
|
|---|
| Protein sequence | MLTIALRNLT ARRRRLIGTF LAVFLGVAFL AGTLTLNATL SRNFDNLFAT ADSNVAAVVH
SDTLIASSGS GAPFGGLRAS VPSQLADSLR AVPGVADAQP DITGYGQLLG ADGKAVGGNG
PPRTAGNWIP SAALNPYHLV AGRAPQDVAA EQPVQVVINR GAANSGHLKI GDTTIVQMPL
PVRVTIVGIA GFGTQDGIGQ VTYAGFTQTV AEKYIARPGQ ASQILIAAKK GVSQDTVVDS
VAKTLPPGVS AITGAAYTKA NTDAIGKAFL TFFKGFLLVF AAVALLVAAF SIHNTYTILI
AQRTRENALL RALGASRGQI LRSSLAEAAA LGLAASAVGI VGGLGIAQAL KALFDVAGFA
LPAGGLAVTG STIAVALLVG VGVTSLAALS PAVRASRVPP LAALREASVG ETSSGFGRVR
TPIGAVLLGG GMLLAVAGGS LAAVGAGAAA TTVGVVMVGP VAARAAVRVL GSVVTGDGRL
AGTTGVLARR NAARDPRRTS ATATALMVGV AVVTLLTVFA TSVKTSLKSD VDRSFVGDLA
VSSPAFGGGG LSPQLASDLQ KVPRVAAAVG IGQGTASISG AATNVSFADT GKLSQAVSLD
VRGGSAAALS GGHEIGVSAS EAKKHPLGSS VTVVFPDGTA STVPVGFVYG PRGSLDGYLV
DAATWSAHAN QVTDTSVIVK LAPGTSAAAA RSAITAAVVP YGSPDVQDRQ QYADAQASGV
DVVLTISYVL LVLAIVIALA GIANTLALSV HERTRELGLL RAVGLTRPQT RALVRWESLL
VALFGTLGGV ALGTFLAWTL VRAAGSSTAI GFAASPATLL LILAAGAVAG VAAAARPARR
AARLDLLAAI AQE
|
|---|
| |