Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_8279 |
Symbol | |
ID | 8339658 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 9588777 |
End bp | 9590819 |
Gene Length | 2043 bp |
Protein Length | 680 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644961365 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_003118943 |
Protein GI | 256397379 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.270413 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTGCAG AGTCGACAGG CGCCGGAGCG GACGAGAAGA ACGAAGTCCC GCTGGTCTTC GCCGGCGTCA TGCTGGGCAT GCTGCTGGCC GCGCTGGACC AGACCATCGT CTCCACGGCG CTGCCGACCA TCGTCTCCGA CCTCGGCGGC GCCAACCACA TCTCGTGGGT GGTGACCTCC TACCTGCTGG CGTCCACGGC GCTGACGCCG CTGTGGGGCA AGCTCGGCGA CCAGTTCGGG CGCAAGCGGA TCTTCCAGAC CGCGATCGTC GTCTTCCTGA TCGGCTCGGC GCTGTGCGGG CTGTCGCAGA ACATGACCCA GCTGATCGCC TCCCGCGCGC TGCAGGGCGT CGGCGGCGGC GGGCTGATGG TGCTGGCGAT GGCGCTGATC GCTGACGTCG TCCCGCCCCG CGACCGCGGC AAGTACCAGG GCGTGGTCGG CGCGGTGTTC GGCGTGGCGA GCGTGATCGG CCCGCTGATC GGCGGCTTCT TCGTGGACAA CCTCAGCTGG CGCTGGGTGT TCTACGTCAA CCTGCCGGTC GGCGCGATCG CGCTGGTCGT CGTCGCCATC GGCCTGCGCA CCCACACCGC GCACCGCAAG CCGGTGATCG ACTACCTCGG CACGTTCCTC ATCGCCGCGG CCGCCAGCTC CCTGATCCTG ATCACCAGCT TCGGCGGCAG CACCTGGGCC TGGAGCTCGT GGCAGGTGTA CCTGTGCGGC GCGGTGGCGG CGGCGTGCCT GATCGCCTGG TTCTACGCGG AGAAACACGC CAAGGAACCG GTACTGCCGC TGCACATGTT CAAAAACCCG GTCTTCGCGA TGTGCAGCAC GATCGGGTTC GTCGTGGGCT TATGCATGTT CGGCAGCCTG ACCTTCCTGC CGCTGTACCA ACAGGTCGTG CACGGCGCGA CGCCCACCGC CTCCGGTCTC CAGCTGCTGC CGCTGATGGC CGGCCTGCTG TTCGCCTCGA TCACCTCCGG GCAGCTGATC AGCCGGACCG GCCGCTACAA GATCTTCCCG ATCGTCGGCA CGGCGGTGAT GACCGTCGGC GCCTGGCTGC TGTCCCGCAT GACCGACACC ACGTCCACCG CCTCGAACGC GGTCGCGATG CTGGTCTTCG GCCTCGGGCT CGGCCTGGTG ATGCAGGTGC TGATCATCGC GGTGCAGAAC AACGTGGACT ACGAGGAACT GGGCACGGCG ACCAGCGCGG TGACGTTCTT CCGCTCCATC GGCGGCGCGT TCGGGGCGTC GCTGTTCGGC ACCATCTTCA ACAACAAGCT GACATCCGAG ATCAAGACGG CGGTGGCGAA CGGGACGATC AGCCCGAAGT TCCCGTTCGA GCAGGCGATC GAGAACCCGA CGGTCATCAA GCAGTTCCCC AAATCGGTGA CGCAGCCCTT CCTGCACACG TACGCACACG CGCTGCACTA CGTCTTCCTC TACGCGATCC CCCTGTGCAT CCTGGCTTTC CTGCTCGCCC TCTTCCTCCG CGAAGTCCCC CTGCGCACCA CGACCCGCGG CACCGGAGCC GCCGAGGCGA GCACCGGCCC GACGCAGCGC TCCTCCATCG ACGAGCTGGA GCGCGCACTC ACCCGCCTGT CCAGCCGCCA GAACGTGAAG GACCGCTACA CCCAAACGAT CGTCAAATCA GGCATCGACA TCACCGTCCC AGAGGCATAC GGCCTCTTCC GCCTGAAGCA ATTCGGCCCG ACCCGCATCG ACGACATCCC CACCCGCCTG AACCTCCCGA TGTCCGAAAT CCGCCCCCAC CTCGACACCC TGGTGGCCAC CGGCCGAGCC GCCCTCGAAG GCACCCCGCC CCACCAGACC GTGGTGATGA CCGAAGCCGG CGAAGCAGCC GTCGACGCCC TCTGCGCCGC CCGCCGCGCC ATCCTCGTGG ACCAACTCGA CGGCTGGTCA CCCGACCAGC ACGCCGAACT CCTCACCATG CTGCGCCAAC TCGCCGACTC CTCCATGGAC CAGGAGGACC GCCACCTGCT GGCGGACGAC GCGGCGGGGA AGGCTGCTGC GGCGGGGATG TAG
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Protein sequence | MSAESTGAGA DEKNEVPLVF AGVMLGMLLA ALDQTIVSTA LPTIVSDLGG ANHISWVVTS YLLASTALTP LWGKLGDQFG RKRIFQTAIV VFLIGSALCG LSQNMTQLIA SRALQGVGGG GLMVLAMALI ADVVPPRDRG KYQGVVGAVF GVASVIGPLI GGFFVDNLSW RWVFYVNLPV GAIALVVVAI GLRTHTAHRK PVIDYLGTFL IAAAASSLIL ITSFGGSTWA WSSWQVYLCG AVAAACLIAW FYAEKHAKEP VLPLHMFKNP VFAMCSTIGF VVGLCMFGSL TFLPLYQQVV HGATPTASGL QLLPLMAGLL FASITSGQLI SRTGRYKIFP IVGTAVMTVG AWLLSRMTDT TSTASNAVAM LVFGLGLGLV MQVLIIAVQN NVDYEELGTA TSAVTFFRSI GGAFGASLFG TIFNNKLTSE IKTAVANGTI SPKFPFEQAI ENPTVIKQFP KSVTQPFLHT YAHALHYVFL YAIPLCILAF LLALFLREVP LRTTTRGTGA AEASTGPTQR SSIDELERAL TRLSSRQNVK DRYTQTIVKS GIDITVPEAY GLFRLKQFGP TRIDDIPTRL NLPMSEIRPH LDTLVATGRA ALEGTPPHQT VVMTEAGEAA VDALCAARRA ILVDQLDGWS PDQHAELLTM LRQLADSSMD QEDRHLLADD AAGKAAAAGM
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