| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_8171 |
|---|
| Symbol | |
|---|
| ID | 8339550 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 9478170 |
|---|
| End bp | 9479204 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644961257 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_003118835 |
|---|
| Protein GI | 256397271 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAGA AAGTCCTCGT CTCCGGCTCG GCCGGCTTCA TCGGCGGCTA CATCGTGGAG
GAGCTGCTTT CGCGCGGCTA CCAGGTCGTC GGGATCGACA ACTACTCGAA GTACGGCAAG
ATCACCAAGT CCTACGACGA CCACCCGGAC TACGCCTTCC ACGAGGGCGA CGTCCGGGAC
ACCGCGCTGA TGGCCGAACT GCTCGCCGGC TGCGACCACT TCATCGCCGG CGCCGCGCTG
ATCGGCGGCA TCTCCTACTT CCACACCTAC GCCTACGACC TGCTCGCGAC CAACGAGCGG
ATCATCGCCT CCTCGTGCGA CGCGGCGATC AAGGCGCACG CCGTCGGCTC CGGCCGGCTG
CAGAAGGTCA CGTACATGTC CTCCTCGATG GTCTTCGAGT CCACCGAGGT GTGGCCCTCG
GTCGAGGGCT CCGAGCGCAG GGTGCCGCCG CCGCTGTCCT CGTACGGCTT CCAGAAGCTG
GCCGTGGAGT ACTTCGCGCG GGCGGCGTGG GACCAGTACA AGCTGCCCTA CACGATCGTG
CGGCCGTTCA ACTGCGTCGG CATCGGCGAG TCCCGCGCGC TGGGCGACGA GGAGATCCTG
TCCGGCAACG TCAAGCTGGC GATGAGCCAC GTCGTGCCGG ACCTGGTCCA GAAGATCGTC
AAGGGCCAGG ACCCGCTGCA CATCCTGGGC ACCGGCGAGC AGATCCGGCA CTACACCTAC
GGCGGGGACC TCGCGCGCGG GATCGTCACC GCCATGGAGC ACCCGGCGGC GCTGAACGAC
GACTTCAACC TGTCCACCCC GGACGGGCAC TCCGTCGCCG AGCTGGCCGA GGCGATCTGG
CGCAAGATCA AGGGCCCTGA CGTCCCGCTG CGCCTGGTCT GCGACGATCC GTTCGAACAC
GACGTGCGGC GCCGCGTGCC GGCCACCGAG AAGGCCGAGC GGGTGCTGGG CTTCCGGGCC
GACACCTCGC TGGAGGACAT GCTCGACGAG GTCATCCCGT GGATCGCCGC CGCGGTGGAG
AACGGCACGA TCTGA
|
|---|
| Protein sequence | MSEKVLVSGS AGFIGGYIVE ELLSRGYQVV GIDNYSKYGK ITKSYDDHPD YAFHEGDVRD
TALMAELLAG CDHFIAGAAL IGGISYFHTY AYDLLATNER IIASSCDAAI KAHAVGSGRL
QKVTYMSSSM VFESTEVWPS VEGSERRVPP PLSSYGFQKL AVEYFARAAW DQYKLPYTIV
RPFNCVGIGE SRALGDEEIL SGNVKLAMSH VVPDLVQKIV KGQDPLHILG TGEQIRHYTY
GGDLARGIVT AMEHPAALND DFNLSTPDGH SVAELAEAIW RKIKGPDVPL RLVCDDPFEH
DVRRRVPATE KAERVLGFRA DTSLEDMLDE VIPWIAAAVE NGTI
|
|---|
| |