| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_8102 |
|---|
| Symbol | |
|---|
| ID | 8339480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 9395407 |
|---|
| End bp | 9396936 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644961187 |
|---|
| Product | drug resistance transporter, EmrB/QacA subfamily |
|---|
| Protein accession | YP_003118766 |
|---|
| Protein GI | 256397202 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCTC AGCCGTCCGA CGACCGGCTG CCCCGCGAAT ACCTCAAGAT CGGCGTCGCC
CTGGTCCTCG GCGCCGCCAT GGCGATGCTC GACGCGACCG TGGTCGCGGT CGCCACCCGC
ACTCTGGCCG AGCGCTTCGG CTCGACGCTG TCCGCCGTGG CCTGGGTGTC CACGGCCTAC
CTGCTCACGA TGTCCGTGGT CGTGCCGCTG GCCGGCTGGA GCATGGACCG CTTCGGCGGA
CGCCGGGTGT GGCTGCTCGG CGTGACCGCC TTCCTGGCCG GCTCGGTGTT GTGCGGCGCG
GCGTGGTCGA TCCCGAGCCT GATCGTCTTC CGGGTGCTGC AGGCGCTCGG CGGCGGCCTG
ATCCAGCCGG TCGGCCAGGC GCTGCTCGGC CGCAGCGTCG GCCCGCGGTA CATGGCCCGC
GTGATGGCGG TGATGTCGGT CCCGATGGCG CTGCTGCCGG TCCTCGGTCC GGCGGTCGGC
GGCCTGCTGC TGGCCGAGTG GGGCTGGCGC TGGATCTTCT TCATCAACGT GCCGATCGGC
CTGGCCGCGA TCACCCTGGC CCGCCGCTGG GTCCCGGTCT CGACGCCGAG CCCGGCCGGC
ACGGCGCGCT TCGACCTGCG CGGCTTCGCC CTGATCTCCC CGGGACTCGC GGCCCTGGTC
TACGGCTGCT CGGCGGCCGG CGACCACGGC GGCTTCGCGT CCCCGGCGGC ATGGGTCCCG
GTGGCCGCCG GCGTGGCACT GGTGACGGCG TTCGTGCTCT ACAGCCTGCG CACCAAGATC
CAGCCGCTGG TGGACCTGCG CCTGTTCCGC GACCGCGCCT TCGCCGTCGC GATGCTGAAC
TCCGCACTGA TGGGCGCGAC CCTGTTCGGC GCGATGTTCC TGCTGCCGCT GTACTTCCAG
CAGGCACACG GATTCTCACC CCTGCGCGCC GGCCTGGTCC TGGCACCGCA GGGTCTCGGA
ACCGCCCTTT CGACAGTCGC CGCCGGCCGC CTGACCAACC GCACCGGCCC GCGCGTCCTG
GTGGTGACGG GCACGGCGGT CGCGACAGCG GCGACCCTCC CCTTCGCCCT CGTCGGCGCG
CACACATCGG CCACCGCCCT GGAACTGCCC CTGTTCCTGC GCGGACTGGG CCTCGGCCTG
GTGATGGCAC CCCTGATCGC CGCCGGTTAC AGCACCCTGC GCCGCGCCTC GATCCCTCAG
GCGACGACGA CGTTCAACAT CCTGAACCGG GTCGGCGGCT CGATCGGCAC AGCGGTCCTG
GCTGTGATCC TGGTGCGGGG ACTGGCAGAC GGGACACCGA CGGCGGCACA CGTCGCGTCC
GCCTACGGCG CCACCTTCTG GTGGGCGCTG GCATGCACGG CGGTGACCCT GGTGACGGCA
GCGTTCCTGC CGGGAGCGAA GGCGATGCGC GCGGCACTGG CGGCGGCTGC GGTGCATCAG
GATGCGGATG CGGGTGCCGG CGCAGGTGCC AATGCTGGCG CGGGCACAGC CGGTGTCGCA
GAGCCCGAAA CCGCTGCGGC CGCGGCGTGA
|
|---|
| Protein sequence | MNAQPSDDRL PREYLKIGVA LVLGAAMAML DATVVAVATR TLAERFGSTL SAVAWVSTAY
LLTMSVVVPL AGWSMDRFGG RRVWLLGVTA FLAGSVLCGA AWSIPSLIVF RVLQALGGGL
IQPVGQALLG RSVGPRYMAR VMAVMSVPMA LLPVLGPAVG GLLLAEWGWR WIFFINVPIG
LAAITLARRW VPVSTPSPAG TARFDLRGFA LISPGLAALV YGCSAAGDHG GFASPAAWVP
VAAGVALVTA FVLYSLRTKI QPLVDLRLFR DRAFAVAMLN SALMGATLFG AMFLLPLYFQ
QAHGFSPLRA GLVLAPQGLG TALSTVAAGR LTNRTGPRVL VVTGTAVATA ATLPFALVGA
HTSATALELP LFLRGLGLGL VMAPLIAAGY STLRRASIPQ ATTTFNILNR VGGSIGTAVL
AVILVRGLAD GTPTAAHVAS AYGATFWWAL ACTAVTLVTA AFLPGAKAMR AALAAAAVHQ
DADAGAGAGA NAGAGTAGVA EPETAAAAA
|
|---|
| |