| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7950 |
|---|
| Symbol | dapD |
|---|
| ID | 8339328 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 9222707 |
|---|
| End bp | 9223558 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644961035 |
|---|
| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
|---|
| Protein accession | YP_003118614 |
|---|
| Protein GI | 256397050 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
|---|
| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAACG CACCGACCTC TCAGGATTTC GCCTCCCCGA TCCCGGCCGT GATCGACGAG
CTGTGGGAGC GCCGCACCGA GCTGAGCCCG GCGGACTCCG ACGCGCGCAA GGCCGTCGTG
GAGGCCGTGG ACCTCATCGA CGCCGGCACC GCGCGGGCGG CGTTCGTCGA CGCGGCGACC
GACGAGGTCG TCGTGGACGA GCGGGCCAAG CGCGCGATCC TGCTCTCCTT CAAGGTCCTG
GACATGGTCG AGTCGAACGC CGGGGACTTC CGCTACCACG ACAAGATGCC GCTCAAGGCC
GATTTCGGCG GCGCGCGCGT GGTCCCCGGC GCCATCGTCC GCTGGGGCTC CTACGTCTCC
TCCGGCGCGA TCCTGATGCC CTCGTTCGTG AACATCGGCG GCTACGTCGA CGCCGGCACC
ATGGTCGACA CCTGGGCCAC GGTCGGGTCC TGCGCGCAGA TCGGCAAGAA CGTGCACCTG
TCCGGCGGCG TCGGCATCGG CGGCGTCCTG GAGCCGGCGA ACGCGGTCCC GGTCGTCATC
GAGGACGACG CGTTCATCGG CTCGCGCTCG ATGGTGGTCG AGGGCGCCCG CGTCCGGCAG
GGCGCCAAGC TCGGCTCTGG GACCAACATC ACCAAGTCGA TGCGCGTCTT CGACGCCGAG
ACCGGCGAGG AGCTGCCCCG CGGCGAGGCG CCGGCCTGGT CGGTCTGCGT CAGCTCGACC
CGGGTGAAGA AGTTCCCCGG CGGGGAGTTC ACCACCCCCT GCCTGCTGGT GCTGCGCCGC
CTGGAGCCCG GCGAGTCGCA CGACAAGCTG CAGATCAACG ACATGCTCCG GGACAACGGG
TTCACCGGCT GA
|
|---|
| Protein sequence | MTNAPTSQDF ASPIPAVIDE LWERRTELSP ADSDARKAVV EAVDLIDAGT ARAAFVDAAT
DEVVVDERAK RAILLSFKVL DMVESNAGDF RYHDKMPLKA DFGGARVVPG AIVRWGSYVS
SGAILMPSFV NIGGYVDAGT MVDTWATVGS CAQIGKNVHL SGGVGIGGVL EPANAVPVVI
EDDAFIGSRS MVVEGARVRQ GAKLGSGTNI TKSMRVFDAE TGEELPRGEA PAWSVCVSST
RVKKFPGGEF TTPCLLVLRR LEPGESHDKL QINDMLRDNG FTG
|
|---|
| |