| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7921 |
|---|
| Symbol | |
|---|
| ID | 8339298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 9193134 |
|---|
| End bp | 9194138 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644961005 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_003118585 |
|---|
| Protein GI | 256397021 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.376076 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATC ACGAACTCGA CCCGGTGACG GCCGGGGCGC CCCGCGCGCC CCGCCGCCGC
CGGGTGGGCA GGCTCAGCGG CCGGGACAAG GCCGTGGTGG CCGTCCTGCT GGGCCTGCCC
ATCCTCATCG ACCTCGCGTT CATCTGGGGC CCGACGCTGG CCACGGTGGG ACTGTCGTTC
ACCAAGTGGA ACGGCGTGGG CGGACTGTCC TCCAAGACCT GCCAGCCGAA CGTCCCGTCG
ATCCTCAACA ACGGCTGTCT GTACGGCGTG CAGAACTACC ACCAGGCCGC GACGATCTAC
CCGGAGTTCT GGCCCGCGGT CCGACACAAC CTGATCTGGC TGGCTGTCTT CGTCTTCTTC
GCCACCCCGC TGGGCATGCT GTTCGCGGTG CTCATCGACC GCGGTATCAA GGGCAGCCGG
ATGTACCAGA GCATCCTGTT CCTGCCGGTG ATGCTCTCCC TGGCACTGGT CGGCATCATC
TGGGAGTTCA TGTACTCCCA GAACTACGGC CTGATCAACA CCGTCATCGG ACACAACCAC
GACACCAACG CCATTGACTG GCTCGGCAAT CCGAAGCTGA ATCTGTGGTC GGTGCTGGTC
GAGGCCAGCT GGCGCCAAGC CGGCTACGTG ATGGTGCTCT ACCTGGCCGG GCTCAAGGCC
GTGGATCCGA CGCTGCGCGA GGCCGCGCTG ATGGACGGCT CCAACGCCTG GCAGACCTTC
TGGAAAGTGA TCTTCCCGGT GATGCGGCCC ATCAACGTGG TCGTCATGGT GGTGACCGTC
ATCGAGTCGC TGCGCGCCTT CGACCTGGTC TACATCACCA ACAAGGGCAT CAACGGCCTG
GAGCTGTTGT CGGTCCTGGT CACCTCCAAC ATCGTCGGGG AGACCCAGCG GGTCGGCTTC
GGGTCGGCAC TCGGCGTGGT GCTGCTGGTC ATCTCCCTCG TGCCGATCTG TACGTTCCTG
TACCTCACGT TCCGCCGTGA GAGCCAACCC AAGGGCGCCC GATGA
|
|---|
| Protein sequence | MTDHELDPVT AGAPRAPRRR RVGRLSGRDK AVVAVLLGLP ILIDLAFIWG PTLATVGLSF
TKWNGVGGLS SKTCQPNVPS ILNNGCLYGV QNYHQAATIY PEFWPAVRHN LIWLAVFVFF
ATPLGMLFAV LIDRGIKGSR MYQSILFLPV MLSLALVGII WEFMYSQNYG LINTVIGHNH
DTNAIDWLGN PKLNLWSVLV EASWRQAGYV MVLYLAGLKA VDPTLREAAL MDGSNAWQTF
WKVIFPVMRP INVVVMVVTV IESLRAFDLV YITNKGINGL ELLSVLVTSN IVGETQRVGF
GSALGVVLLV ISLVPICTFL YLTFRRESQP KGAR
|
|---|
| |