| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7890 |
|---|
| Symbol | |
|---|
| ID | 8339266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 9155268 |
|---|
| End bp | 9156632 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644960973 |
|---|
| Product | 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| Protein accession | YP_003118554 |
|---|
| Protein GI | 256396990 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.698436 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.855857 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCCG CCGAGAAGAC CCTGTGGTCC GCGCCGTCCG CCCACCGCCC TGTGACGGCG
GACGTCCGCG TCCCGGGATC GAAGTCGGCG ACCAACCGCG CATTGCTGCT GGCCGCGTTG
GGCGACTCGC CGTCGACGAT CACCGGCGGG CTGCGGGCCC GGGACTCGGT GCTGATGATC
GGCGCGCTGC GCGCACTCGG CGTCGAGGTG GACGCCGGCG AGGACTTCGA CGCCCCGGTC
TGGCGGATCA CGCCTCCGGC CCAGCTCCGC GGCGGCGACG CCGGGGCGCC CGCGAAGGTG
GACGTCGGCC TGGCCGGAAC CGTCATGCGC TTCCTGCCGC CGGTCGCGGC GCTGGCCGCC
GGGCAGGTGT ACTTCGACGG CGACCCCTAC GCGCGCGCCC GTCCGATGGG CACACTGCTG
CAGTCGCTGC GCGACCTCGG CGTGCGGATC GACGACGGCG ACCGCGGCAC CTTCCCCTTC
CTGGTCGAGG GCGCCGGGCA GGTGGCCGGC GGGCTGGTGG AGCTGGACGC GACCGCCTCC
TCGCAGTTCA TCTCGGCGCT GCTGCTGGCC GGCTCCCGCT ACCTGAAAGG GGTCGAGGTG
CGGCACGTCG GCGGGCCGAT CCCCTCCCAG CCGCACATCG ACATGACCGT GGAGTTCGTC
CGGGCCGCCG GCGGCACCGT TGATGCCTCC GAGCCGGGAC GCTGGGTCGT CACTCCTTCG
GTGCTGCGCG GCCGCGAGTG GAGCATCGAG CCGGACCTGT CCAACGCCGC TCCGTTCCTG
GCCGCGGCCC TGGTGACCGG CGGAACGGTG ACGATCCCGG ACTGGCCGGC GGCGACCACC
CAGGCCGGGG ACGCTTCGCG GCACCTGCTG CGGGAGATGG GTGCCCGGGT GGAACTCACG
CCCGCGGGGC TGACCGTCTC CGGCGGCGCC GGCGTGCACG GCATGGAGGC CGACCTGCGC
GACGTCGGCG AGCTGACGCC GACCCTGGCC GCCGTCGCGG CACTGGCGGA CTCCCCCTCC
CGCTTCACCG GCATCGGCCA CCTGCGCGGG CACGAGACCG ACCGGCTGGC GGCGCTGGCC
CGGGAGATCA ACGGGTTGGG CGGCGATGTG GTCGAGGAAC CGGACGGACT GCTGATCCGT
CCGGCCAAGA TGCACTCCGG CGTCTTCGCC ACCTACGACG ACCACCGGAT GGCCACCGCC
GGCGCGGTGC TCGGCCTGGC GGTGCCCGGC GTCGAGGTGG AGGACATCGC CGCGACCGGC
AAGACGCTGC CGGACTTCCC GGCGATGTGG GCGGCGATGC TGGACGCCGA CGGCGACCGG
GACCCCGCGT CCGGCGCCCC GGCCCCGACC GGGGTCCACG GCTGA
|
|---|
| Protein sequence | MTSAEKTLWS APSAHRPVTA DVRVPGSKSA TNRALLLAAL GDSPSTITGG LRARDSVLMI
GALRALGVEV DAGEDFDAPV WRITPPAQLR GGDAGAPAKV DVGLAGTVMR FLPPVAALAA
GQVYFDGDPY ARARPMGTLL QSLRDLGVRI DDGDRGTFPF LVEGAGQVAG GLVELDATAS
SQFISALLLA GSRYLKGVEV RHVGGPIPSQ PHIDMTVEFV RAAGGTVDAS EPGRWVVTPS
VLRGREWSIE PDLSNAAPFL AAALVTGGTV TIPDWPAATT QAGDASRHLL REMGARVELT
PAGLTVSGGA GVHGMEADLR DVGELTPTLA AVAALADSPS RFTGIGHLRG HETDRLAALA
REINGLGGDV VEEPDGLLIR PAKMHSGVFA TYDDHRMATA GAVLGLAVPG VEVEDIAATG
KTLPDFPAMW AAMLDADGDR DPASGAPAPT GVHG
|
|---|
| |