| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7887 |
|---|
| Symbol | |
|---|
| ID | 8339263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 9151247 |
|---|
| End bp | 9152581 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644960970 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003118551 |
|---|
| Protein GI | 256396987 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0760347 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0510662 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAGCA CCCCGGACTC CGAAGAAGTC CCCTACGGCG AGGTCGTGGG CTTCCTGCGC
GATCTCATCC GGATCGACAC GTCGAACCCG GTCAAGCCCG AACGGCCCGC TGCCGAGTAC
GTCGCCGAGA AGCTCGCCGA GGCCGGTCTG GAACCTCAGA TCTTCGAGTC GGAGCCCGGC
CGGGCCAGCG TCGTGGCGCG CGTGGAGGGC TCGGATCCGA GTGCCGACGC GCTGCTGCTG
CACGGGCACC TGGACGTGGT GCCGGCGGAC CCCGCCGACT GGACCGCCGA CCCGTTCGGC
GCCGAGGTGC GCGACGGGAT GGTGTGGGGG CGCGGCGCGG TCGACATGAA GGACATGGAC
GCGATGATGC TCGCCGTCAC GCGCCGCATG CTCCGCGAGG GCCGCAAGCC GCGCCGTGAC
ATCGTGCTGG CGTTCCTGGC CGACGAGGAG GCCGGCGGCA ACTACGGCGC CAAGTTCCTG
GCCAAGGAGC ACCCGGACCT GTTCGACGGC GTGTCCGAGG CGGTCAGCGA GGTCGGCGGC
TACTCCTACG AGGTCTCGCC GGACCTGCGC TTCTACCTCA TCGAGACCGC GCAGAAGGGT
CTGGCGTGGA TGCGCCTGCA GGCCCGCGGC CAGGCCGGCC ACGGGTCGAT GATCAACGAC
GACAACGCGG TCACCGCGGT GGCCGAGGCG GTCGCGCGCA TCGGCCGGCA CGACTGGCCG
GTGACCCTGA CGCCGACCGT GACGACCTTC CTCTCCGAGG TCACCGAGGC GCTCGGCGTC
GACTTCGACC CGAAGGACCC GGCCTCGGCG CGGGCCGCGG TGGCCAAGAT CGGCCCGCTG
GCCCGGTTCA TCGGCGCCAC GCTCCAGCAC ACCGCGAACC CGACGAAGCT GGAGGCCGGG
TACAAGGTGA ACGTGATCCC CGAGCGGGCG TTCGCCGAGA TCGACGGCCG CTTCCTGCCG
GGTCTGGAAC AGGAGTACTT CGCCGAGATC GACAAGCTGC TCGGTCCGGA CATCACCCGC
GAGTTCACGC ACTATGACAT CGCGCTGGAG GCGCCGTTCG AGGTGCCGCT GGTGGAGAAG
ATGCTGGTCT CGCTGCAGGC CGAGGACCCG GCGGCGCGCA TAGTCCCCTA CTGCCTGTCG
GCGGGCACCG ACAACAAGAC ATTCGGCGTG ATGGACATGG GCCGGGGCGT GATCCGCGGC
TACGGCTTCG TGCCGCTGAA GCTAGACCCG AGCCTGGACT TCGCGGCGAT GTTCCACGGC
GTGGACGAGC GGGTGCCGCT GGACGCCTTG GAGTTCGGGA GCAAGGTGCT CGACCGGTTC
CTGACAGTGG CCTGA
|
|---|
| Protein sequence | MTSTPDSEEV PYGEVVGFLR DLIRIDTSNP VKPERPAAEY VAEKLAEAGL EPQIFESEPG
RASVVARVEG SDPSADALLL HGHLDVVPAD PADWTADPFG AEVRDGMVWG RGAVDMKDMD
AMMLAVTRRM LREGRKPRRD IVLAFLADEE AGGNYGAKFL AKEHPDLFDG VSEAVSEVGG
YSYEVSPDLR FYLIETAQKG LAWMRLQARG QAGHGSMIND DNAVTAVAEA VARIGRHDWP
VTLTPTVTTF LSEVTEALGV DFDPKDPASA RAAVAKIGPL ARFIGATLQH TANPTKLEAG
YKVNVIPERA FAEIDGRFLP GLEQEYFAEI DKLLGPDITR EFTHYDIALE APFEVPLVEK
MLVSLQAEDP AARIVPYCLS AGTDNKTFGV MDMGRGVIRG YGFVPLKLDP SLDFAAMFHG
VDERVPLDAL EFGSKVLDRF LTVA
|
|---|
| |