Gene Caci_7859 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_7859 
Symbol 
ID8339235 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp9117155 
End bp9118081 
Gene Length927 bp 
Protein Length308 aa 
Translation table11 
GC content71% 
IMG OID644960942 
Productdihydrodipicolinate synthase 
Protein accessionYP_003118523 
Protein GI256396959 
COG category[E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase 
TIGRFAM ID[TIGR00674] dihydrodipicolinate synthase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.31907 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.873958 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCCAGA ACGCGCACCC CACCGAGCCC GCCGCCGACC TGTGGTCGGC CGGCGCGCCC 
TTCGGTCGCC TGATCACCGC GATGATCACG CCCTTCCAGG CGGACGGTTC CCTGGACCTG
GACGGTGCGC AGAAACTGGC CGCGAATCTG GTCGACGCCG GCAACGACGG CCTGGTGGTC
TCCGGGACCA CCGGCGAGTC GCCGACCACG ACGGACGCCG AGCAGAAGGC GCTGCTGCGC
GCGGTGCGCG AAGCGGTCGG CGACCGGGCC CACGTGATCG CCGGCGTCGG CACCAACAGC
ACCGCGCACA CGCTGGAGCT GGCCCGGCAG GCCGAGGAAG ACGCCGACGC GCTGCTGGTC
GTGACCCCGT ACTACAACAA GCCCACGCAG GAGGGCCTGT ACCGGCACTT CACCGCTGTG
GCCGACCACA CCTCGCGCCC GGTGGTGCTC TACGACATCC CGCACCGCTC CGGCATCCCG
ATCGAGGTCG ACACGCTCAA GCGGCTCGCC GGCCACGACA TGATCGTCGC GGTCAAGGAC
GCCAAGGGCG ACCTGACCGC GGGGTCCGAG GTGATGGCGG CCACCGGTCT GGCCTATTAT
TCGGGGGACG ACCCGCTGAC CCTGCCCTGG CTCTCGGTCG GGGCGGTCGG CGTGGTGAGC
ATGTCGGCCC ACCTCGCGGC GCCGCGCATC CGCGCGATGA TCGCCGCGTA TCTGGCCGGC
GACGTGGCCG AGGCGGCCCG CCTGCACGCC GAACTGCTGC CGGTCCACGC CGGTGTGACG
AGTCTGCCAG GTGTGATCTC CCTCAAGACG GCAATGAACA TGCTGGGACT GCCCGGCGGC
CCGGTGCGGC TGCCCCTGGT CGAGGCGACC GAGGAGCAGC AGGCCCGGCT CAAGACGTTT
CTCGCCCAAG GCGGCGTGAA GATCTAG
 
Protein sequence
MPQNAHPTEP AADLWSAGAP FGRLITAMIT PFQADGSLDL DGAQKLAANL VDAGNDGLVV 
SGTTGESPTT TDAEQKALLR AVREAVGDRA HVIAGVGTNS TAHTLELARQ AEEDADALLV
VTPYYNKPTQ EGLYRHFTAV ADHTSRPVVL YDIPHRSGIP IEVDTLKRLA GHDMIVAVKD
AKGDLTAGSE VMAATGLAYY SGDDPLTLPW LSVGAVGVVS MSAHLAAPRI RAMIAAYLAG
DVAEAARLHA ELLPVHAGVT SLPGVISLKT AMNMLGLPGG PVRLPLVEAT EEQQARLKTF
LAQGGVKI