Gene Caci_7807 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_7807 
Symbol 
ID8339183 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp9052855 
End bp9056229 
Gene Length3375 bp 
Protein Length1124 aa 
Translation table11 
GC content71% 
IMG OID644960891 
ProductUvrD/REP helicase 
Protein accessionYP_003118472 
Protein GI256396908 
COG category[L] Replication, recombination and repair 
COG ID[COG0210] Superfamily I DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATCCGGG ACACCGAAGA TCTCAAAGCA CTGCTCGGGG TTCCTTACAC GGAAGAACAG 
CTCGAAGCCA TCACGGCGCC GCTCGAGCCG GCCGTCATCG TGGCCGGCGC GGGGTCGGGG
AAGACGACCG TGATGGCTGC CCGCGTCGTG TGGCTGGTCG GGACCGGCCA GGTCGGGCCG
CACGAAGTGC TCGGGCTGAC CTTCACCAAC AAGGCCGCCG CCGAGCTGGC GGAGCGCATC
CGCAAAGCCC TGCGGAAGCT GGAAGACGAA GAACTCGACG ACCCGGATTC CGACCTCACG
GAATCGGTCG GCGAGCCCAC GGTCTCGACC TACCACGCCT ACGCCGACCG CCTGATCAAG
GAGCACGGCC TGCGCTTGGG TCTGGAGCCC TCGGCGCGGC TGCTCGCCGA CGCCACGCGC
TACCAGCTGG CCGTCACCGC CGTGCGCGGT CCCAAGGAGC TGCGCTACTT CAAGGGCAAG
GTCGCTGACC TCGCCGACAA GGTGCTGGCT CTGGACGGCG AGCTGTCCGA GCACCTGGTG
AGCCCGGAAG AGCTGCGCGA ACACGAGGAA GCCTTCATAG GGCAGGCTGA ATCCTTCCGG
GACCCCAAGA GCGGCAAGGC CAAGCGCGGC TACACCGACT TCCTCAAGGC CGCCGAGATC
GCCCGGCAGC GGGTCGAGCT GTCCGAGCTG GTCGAGCGCT ACCGGGACCT GAAGGTGCGC
CGCGACCTGA TCGACTTCGG CGACCAGATG GTGCTCGGCG CGCGGCTGGC CGAGGAGCGG
CCCGAGGTCG GGGCGATCGA GCGCGAGAAG TTCAAGGTGG TGCTGCTCGA CGAGTATCAG
GACACGTCGG TCGCGCAGCG CCGGATGCTG GTCGGGTTGT TCGGTGGCGG CCATCCGGTC
ACCGCGGTCG GCGACCCCTG CCAGTCCATC TACGGCTGGC GCGGCGCCTC GGTGGCGAAC
CTCGACGACT TCCCGGACCA CTTCGCGAAG GCGGACGGCG CCCGTTCCCG CGGCTACACG
CTCAGCGAGA ACCGGCGCAG CGGCGGCCAT CTGCTGGAGT TCGCGAACGT GGTGTCGGAC
CCGCTGCGCC AGCGGCACAC CGGCGTCCGG GAGCTGCGGC CCTCGGCGGA GAAGGCCGAT
CAGGGCTGGA CCCGCGTCGG GCTGACCGAG ACCGCCGAGG AGGAGGTGCG GTGGGTCGCG
CGGATGGTCG CCGACGCGCA CTACCGGGGC GGCGTTTCGC TGCGCGAGAT CGCGGTGCTC
GTGCGCAAGG GCAACCAGAT CCCGCCGCTG TACGAGGAGA TGCACGCCCA AGGGCTGCCG
GTCGAGGTGG TCGGGCTGTC CGGGCTGGTG CACCTGCCCG AGGTCGCCGA CCTGATCGCG
ATGCTGGACG TGTTGGACGA ACCGATCGCC AACGCCTCAC TCGTGCGCCT GCTGACCGGG
CCGCGCTGGC GGATCGGCGC GCGCGACCTG GCGCTGCTCG GGATGCGCGC CAGGGAGCTG
GTGCGCGACC CGGCCGAGTA CGCCGACCGG GCCGGCCGCG ACCGGCTGGC CGAGGCGGTC
GCCGGCTCCG ACCCGACCGA GGTGGTGTCG CTGTCCGACG CCATGGCGGA TCCGGGCCCT
GATCTGCCGT TCTCCGAGGC GGCGCGGGTC CGCTTCGCGC GGTTCGCCTC CGAGATCCGG
ATCCTGCGCC GCCGGCTGTC CGAGCCGGTC CTGGACGTGC TGCACCGGGT GATCTCGGTG
ACCGGGCTGG ACGTGGAGGT CGCGGCGTCG CCGAAGCTGG TCGCGCAGCG CTCGTCCGAG
ACGCTGGCGG CGTTCCTGGT CCGGGCCGCC GACTTCCAGG ACCTCGAGGG CGATCAGTCA
GTAACCGCTT TCCGTGCCTA TCTGAAGGCC GCCGAGCGGC ACGAACGGGG CATCGACGCC
TCGCTGCCCT CGCAGGGCGA CTCGGTGAAG CTGCTGACCA TGCACAAGTC GAAGGGCCTG
GAGTGGGACG CGGTGTTCGT GCCGCACCTG TCCGGCGCGG GGCAGAAGCC GCGCGAGTCC
TGGATCGGCT CCGGCGCGGT GCTGCCCTAT CCGCTGCGCG GCGACGCCGA GCACCTGCCG
GTCCTGGACG ACGCCGGCAA CACCGCGGCG TTCAAGTCCT TCAAGGAGCA GGCCAAGGAG
TACGAGTCCT GGGAGGACCT GCGGCTGGAG TACGTGACGG TCACCCGGCC GCGCTACTAC
CTGACCGCCT CGGGGCATTG GTGGGGTCCG ACGCAGAAGA AGCGCCGAGG CCCGGACACC
TGGCTGAGCG GGTTGTTCGA GCACTGCCAG GACGGCCACG GCGAGGTCGT CGCCTGGGCC
GCCGAGCCCG ACCCCGACGC CGTGAACCCC AGCCTCGGCG CGACCGAGGC GCACTGGCCG
GTGCTGCCGG ACGCCGAGGC GGCCGAGCGG CGGCGGATCG GGGCGGAGAT GGTGGTCACG
GCGCTGCGGC GGCGGCAGGC TGAGGCGTTC GGCGAGCCGA TCGGCGCCGA GCCGGCTTCT
GAGGAACCTC AAGCTGCCGA GCAGCCCGAT GCCGGCGCTG GTGAAGGCGC GCTCGCGCGA
AGTGGAGCCC TGGAACCGGT CCCGTTCTTC GACGAGAACG GCGAACCGAT GACCGATCTC
CTGCCTGCCC AACGCGCCCC GGAGGCGCCG GGCGAGCCGC ACGTCATCGA CGCCGAGCAC
GCCGCCACCG CCGAGGACCG CTCGGCCATC GCCTCCTGGG ACCGCGACCT GGAAGCCCTG
CTCGAGGAGC TCAAGCGCGG CGACTCCATC CAGCGCTACG CCCCGCTCCC GTCCTCGATG
TCGGCCTCCC AGCTGCTGCG GTACCGCAAC GACCCCTCGC GCTTCCGCCG TGAGCTGGCG
CGTCCCATGC CGCAGCCGCC GCAGCCCTCG GCGCGTCTGG GGACCAAGTT CCACGCTTGG
ATCGAGTCGC TGTTCGGGCA GCAGGCGCTG TTCGAGTACG AGGATCTGCC CGGCGCCGCC
GACGAGGAGA TCGCCGACGA AGTGGATCTC AAAGAGCTGC AGGACGCGTT CCTGCGCACG
CCGTGGGCCG ATTCCGTGCC GGCGGCCGTG GAGCAGCCCT TCCAGGTGGT GCTCTCCGGG
CGGGTGGTGC GCGGACGCAT CGATGCCGTA TATAAGACTC CTGACGGATG GGAAGTCGTC
GACTGGAAGA CCTCGCGGTC GCAAGACGCG GACCCGGTCC AGCTGGCCGT CTACCGGCTG
GCCTGGGCCG AGATGCGCGG GGTGCCGTTG TCGGCGGTGT CCGCGGCGTT CGTCTACGTG
CGCGGCGGCG AGACCGTCCG CCCGACCGGA CTGCCCGACC GCGAAGAGCT CGAGGAGCTG
TTCGGAGACG GCTGA
 
Protein sequence
MIRDTEDLKA LLGVPYTEEQ LEAITAPLEP AVIVAGAGSG KTTVMAARVV WLVGTGQVGP 
HEVLGLTFTN KAAAELAERI RKALRKLEDE ELDDPDSDLT ESVGEPTVST YHAYADRLIK
EHGLRLGLEP SARLLADATR YQLAVTAVRG PKELRYFKGK VADLADKVLA LDGELSEHLV
SPEELREHEE AFIGQAESFR DPKSGKAKRG YTDFLKAAEI ARQRVELSEL VERYRDLKVR
RDLIDFGDQM VLGARLAEER PEVGAIEREK FKVVLLDEYQ DTSVAQRRML VGLFGGGHPV
TAVGDPCQSI YGWRGASVAN LDDFPDHFAK ADGARSRGYT LSENRRSGGH LLEFANVVSD
PLRQRHTGVR ELRPSAEKAD QGWTRVGLTE TAEEEVRWVA RMVADAHYRG GVSLREIAVL
VRKGNQIPPL YEEMHAQGLP VEVVGLSGLV HLPEVADLIA MLDVLDEPIA NASLVRLLTG
PRWRIGARDL ALLGMRAREL VRDPAEYADR AGRDRLAEAV AGSDPTEVVS LSDAMADPGP
DLPFSEAARV RFARFASEIR ILRRRLSEPV LDVLHRVISV TGLDVEVAAS PKLVAQRSSE
TLAAFLVRAA DFQDLEGDQS VTAFRAYLKA AERHERGIDA SLPSQGDSVK LLTMHKSKGL
EWDAVFVPHL SGAGQKPRES WIGSGAVLPY PLRGDAEHLP VLDDAGNTAA FKSFKEQAKE
YESWEDLRLE YVTVTRPRYY LTASGHWWGP TQKKRRGPDT WLSGLFEHCQ DGHGEVVAWA
AEPDPDAVNP SLGATEAHWP VLPDAEAAER RRIGAEMVVT ALRRRQAEAF GEPIGAEPAS
EEPQAAEQPD AGAGEGALAR SGALEPVPFF DENGEPMTDL LPAQRAPEAP GEPHVIDAEH
AATAEDRSAI ASWDRDLEAL LEELKRGDSI QRYAPLPSSM SASQLLRYRN DPSRFRRELA
RPMPQPPQPS ARLGTKFHAW IESLFGQQAL FEYEDLPGAA DEEIADEVDL KELQDAFLRT
PWADSVPAAV EQPFQVVLSG RVVRGRIDAV YKTPDGWEVV DWKTSRSQDA DPVQLAVYRL
AWAEMRGVPL SAVSAAFVYV RGGETVRPTG LPDREELEEL FGDG