| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7785 |
|---|
| Symbol | |
|---|
| ID | 8339161 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 9028452 |
|---|
| End bp | 9029714 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644960869 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_003118450 |
|---|
| Protein GI | 256396886 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.157303 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGACA CTCTGACCGA CTCCGCGCCC CGCCGTTCTT TGTGGCGGCA TCGCGACTTC
CTGCTCCTGT GGGGCGGGCA GTCGGTCAGC GAGATCGGCA GCGCGATCAC CGTGCTGGCG
CTGCCGCTGG CCGCGGTGGT GCTGCTGGAT GCCAGCACCT TCCAGGTCGG GCTGCTGACC
GCGATGAGCA CGGTCCCGTT CCTGCTCGTC GCCTTGCCGG CCGGCGCGCT GGTCGACCGC
GCCGCCAAGC ACCGCCTGAT GATGTGGTGC GATGTGGGCC GGCTGCTGCT GATGGCCTCG
GTGCCGCTGG CCACGCTGCC CGGCCTGCAC CTGACCTACC TCCATCTGCT GATCGTCGCG
CTGGCGGCCG GTGTGCTGAC CGTGTTCTTC GACGTCGCCT ACCAGAGCTA CCTGCCGGTG
CTGCTGGAGC GCGGCGAGCT GGTCGACGGC AACGGCAAGC TCGGGACCAC GCAGGCCTTC
GCGCAGTTCG CCGGGCCCTC GCTCGGCGGA GTGCTGGTCG GGGCGCTCGG CGCGGCGCGG
GCCCTGATCG TCGACGCCGC CAGCTACGGC CTGTCGGCGG TGTCGCTGCT GCTGATCCGG
ATGCCGGAAC CGCCGCCGCA TCCCAGCCAC AAGGAACGCA GGATCCGAGA CGGCATCAAG
GAAGGGCTGC ACTTCGTCGT GCGGCATCCG ATCCTGCGCA AGGTCGTGGC GTGCACCGGC
ACCAGCAACC TGTTCAGCTC GATGCTGCTG GCCGTGGAGA TCCCCTTCAT GGTCCGGACG
CTGCACCTCA CGCCGAGCGG CGTCGGCGCG GTGCTCAGCC TGGCCGCGGT CGGCGGGATG
GTCGGCGGCC TGGTCGCGCG GCCGCTGGCG CAGCGCTTCG GCAGCGCGCG GATCATCTGG
CTGGCGCCGC TGGTGCTCGG GCTCCCGACG TTCCTGGCGC CGTTGGCGAC GCCGGGGTGG
GGCGCCCTGT TCTACCCCGC CGGCCTGACG TTCTTCGGGA TGATGGCGGT CGTCTACAAC
GTCGCGCAGG TGTCCTACCG GCAGGCGATC ACCCCGCACG CGCTGCTCGG CCGGATGAAC
GCCAGCGTTC GCTTCATCGT CTGGGGCACC ATGCCGCTCG GCGCGCTGCT CGGCGGTCTG
GTGGGTACCT GGCTCGGGCT GCGGCCCACG CTGTGGATCG CCGTGGCCGG CAGCTATGCG
GCCGTGGCCT GGGTGTTCTT CTCGCCGCTG CGCCGCATGC GCGATGTACC CGATCCCGGA
TGA
|
|---|
| Protein sequence | MTDTLTDSAP RRSLWRHRDF LLLWGGQSVS EIGSAITVLA LPLAAVVLLD ASTFQVGLLT
AMSTVPFLLV ALPAGALVDR AAKHRLMMWC DVGRLLLMAS VPLATLPGLH LTYLHLLIVA
LAAGVLTVFF DVAYQSYLPV LLERGELVDG NGKLGTTQAF AQFAGPSLGG VLVGALGAAR
ALIVDAASYG LSAVSLLLIR MPEPPPHPSH KERRIRDGIK EGLHFVVRHP ILRKVVACTG
TSNLFSSMLL AVEIPFMVRT LHLTPSGVGA VLSLAAVGGM VGGLVARPLA QRFGSARIIW
LAPLVLGLPT FLAPLATPGW GALFYPAGLT FFGMMAVVYN VAQVSYRQAI TPHALLGRMN
ASVRFIVWGT MPLGALLGGL VGTWLGLRPT LWIAVAGSYA AVAWVFFSPL RRMRDVPDPG
|
|---|
| |