| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7612 |
|---|
| Symbol | |
|---|
| ID | 8338988 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 8834429 |
|---|
| End bp | 8835706 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644960696 |
|---|
| Product | F420-0--gamma-glutamyl ligase |
|---|
| Protein accession | YP_003118277 |
|---|
| Protein GI | 256396713 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1478] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01916] F420-0:gamma-glutamyl ligase
[TIGR03553] F420 biosynthesis protein FbiB, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGACA CCTCCTACAC GGTGCACGCG GTCGCCGGGA TCCCCGAGGT CGGGCCCGGC
GACGACGTGG CGGCGCTGAT CGGCGCCGCG GTGACGGCCT CCGGGCTGGG CCTGCGCGAC
GGCGACATCC TCTGTGTCAC CTCCAAGATC CTGTCCAAGG CCGAGGGCCG CGTGGTCCGG
GCCGGCGACC GCGAGGCCGC GATCGACGCC GAGATGGTCC GGCTGGTCGC GCGCCGCGGG
CCGACCCGGA TCGTGCAGAC GCGGCACGGC TTCGTGATGG CCGCGGCCGG CGTGGACGCC
TCCAACACCC CGGCGGGCAC CGTGCTGCTG CTGCCCGAGG ACCCCGACGG CTCCGCCCGG
GATATCGCCG ACGCGCTGCG CGACCGGTTC GGGGTCGCGG TGGGGGTCGT GGTGACCGAC
ACCTTCGGGC GGCCGTGGCG GGAGGGGCAG ACGGACGTCG CCATCGGCTG CGCCTACGTC
AACGCGCTGA TGGACCACCG CGGCACGATA GACGCCTTCG GCAACGAGCT GCTGGTCACC
GCGGCGGCCA CGGCCGACGA GCTGGCCGGC GCCGGCGAAG TGGTGAAGGG CAAGGCCGAC
GGCGTGCCGG TCGCGGTGAT CCGCGGGCTG GGCGATCTGG TGACCGCGGA ACCGGGACTC
GGGGTGCGGC CGCTGATCCG CTCCGCGGAG AGCGACATGT TCTCGCTGGG GACGACGGAA
GCGATGCGCG AAGGGGTGCT GCGGCGGCGG ACGACGCAAT GGTTCGCTTC GGACCCGGTG
CCCGGGGAGA CGGTGCGGCG CGCGGTTGTG GCCGCCTTGA CGGCTCCCAC TCCGTTCAGC
TCTACCTCTT CGGCATCTTC GGCATCTTCG ACATCTTCGG CATCCGAAGG CGACGGCACG
GCTCCGTGGC GGTTCGTCCT GCTGGAGTCC GAGATGGGGC GCAAAACCTT CACCAGTGCG
CTGGCCGACT CCGTACTTGA GCGCGCGCCT TATCTGGTTG TCCCCTGCTA TCTGGCTACA
GCGGCTACAG CGGGTGCCGG TACGGGTACG GAGTTCGTCG TGGCGTCGCT CGGCGCGGCC
GTGGAGAACT TCTTGGTGAC CCTCGCCGCC GACGGCATCG GATCGCTGTG GACGGACACA
GACTCCGACT CTGTCCGGGA GCTCTTAGCG CTTCCCGACA GATGGGAACC GCTCGGAGTC
ATCGCTATAG GAAAACCCGC GGAGACAACC CCCTCGGTGC CTCCGCGGGA TCCTGAGGAC
TTCATCACCG TCCGTTGA
|
|---|
| Protein sequence | MADTSYTVHA VAGIPEVGPG DDVAALIGAA VTASGLGLRD GDILCVTSKI LSKAEGRVVR
AGDREAAIDA EMVRLVARRG PTRIVQTRHG FVMAAAGVDA SNTPAGTVLL LPEDPDGSAR
DIADALRDRF GVAVGVVVTD TFGRPWREGQ TDVAIGCAYV NALMDHRGTI DAFGNELLVT
AAATADELAG AGEVVKGKAD GVPVAVIRGL GDLVTAEPGL GVRPLIRSAE SDMFSLGTTE
AMREGVLRRR TTQWFASDPV PGETVRRAVV AALTAPTPFS STSSASSASS TSSASEGDGT
APWRFVLLES EMGRKTFTSA LADSVLERAP YLVVPCYLAT AATAGAGTGT EFVVASLGAA
VENFLVTLAA DGIGSLWTDT DSDSVRELLA LPDRWEPLGV IAIGKPAETT PSVPPRDPED
FITVR
|
|---|
| |