| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7546 |
|---|
| Symbol | |
|---|
| ID | 8338916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 8746323 |
|---|
| End bp | 8747792 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644960625 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_003118212 |
|---|
| Protein GI | 256396648 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1232] Protoporphyrinogen oxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.50279 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGTA GGGCGGATCT CGTCGTGCTC GGCGCCGGCC CGGCGGGCCT GGCGGCGGCG
TGGTACGCGG CGCGCCGCGG CTTGTCCGTG GACGTGCTGG AGCGGGCCGA GACCGTGGGC
GGGATGGCCG CGTCGTTCGA CGTCGCCGGC TTCCGGGTGG ATCTGGGCAG CCACCGGCTG
AACCCGGACC TGCCGGAGAA CATACTGGCC GATCTCAGAT CCCTGATGGG ATCGGACCTG
CAGACCCGCT ATCGCAACGG CCGGCTGCTG GTCGGCGACC GCTGGGTCAC CTATCCGTTC
AAGCCGCGCG AGCTGGCCAA GGCCATGCCG ACCGTGCCGA TGGCCCGCGC CGCCTTCGAC
GCGCTGGCCA CCACCTGGCG CGGCAAGAAG CAGATCGCCG CCGCCGACTC CTACGCGGAG
CTGATGCGCG CCGGCTTCGG GCCGACCATG TACAAGCAGG TCTACGAGCC CTACGCCGCC
AAGCTGTGGG GCGTCACCGG CGACGACATC GACATCGACC AGGCCCGGCG CAAGGCGGGC
TCGCAGACGA TGTGGGGCGC GCTGGTGCGC AGCGTCCGCA ACTCGATCGC GAGCGAGTCG
CTGGCCTACC TCTACCCGCG CCGCGGCTTC GGCCAGCTCT GCGAAACCCT CGCCGACGCC
GCGATGGAGG CCGGTGCGCG CATCCGCCTC GGCGCCGCCG CCGAGCACCT CACGGTCGAC
GCCGAGGGCG TCAGCGTCAG CCTGGCCCGC TCGGAGTTCC ACGGCTCGGC CGCCGAACGC
GGCGGCTGGT CGGGGGAGCA GCACTGGGCC GAGGGCGGCA CGGACATCCG GGCCGGACAC
GTCTTCTCGA CCATCCCGGT CCCGCTGCTG GCCCGCCTGA CCTCGCCGGG CGCGCCGTAC
GAGGCGGTGG AGGCCAGCGG CAAGCTGCGC TTCCGCGCCA TCCTGCTGGT CTACGCCGTC
CACGCCGGCG GCCGCTGGAC CGGTTGCGAC GTGCACTACA TCCCCGACGG CGACACCCCG
GTGACGCGCA TCTCCGAGCC GGCGAACCAC CGCTTCTCCC CGGACGACCC GACCGAGCGC
ACCGTGCTGT GCTTCGAGAT CCCCTGCGAC ATAGGGGACG ACCTGTGGGC CGCGGACGAG
GACCAGCTCG CGAACCTGAT CCGGGAGACG GTGCGCCGCC TCGGGCTGCC GCAGCTGAAC
CTGGAATGGG TGCAGGTCAA GCGGATGCGC CAGGTGTACC CGATCTACCA CAAGGGCTAC
CGCGAGGCGC TGGCCGACCT CGAGGGCTGG GTCGAGTCGC TGCCGCACGT CACGACCTTC
GGCCGGCTGG GCCTGTTCAC CCCGGACAAC ACCCACCACG CGCTGCTGAT GGGCTACGAG
GCCGCCGACG CCCTGGGCAC CGGGCAGTGG GACCAGCAGA TGTGGTCCGA GGCGCGGGAC
CGGTTCACCC AGCACGTCGT CGAGAGCTGA
|
|---|
| Protein sequence | MTGRADLVVL GAGPAGLAAA WYAARRGLSV DVLERAETVG GMAASFDVAG FRVDLGSHRL
NPDLPENILA DLRSLMGSDL QTRYRNGRLL VGDRWVTYPF KPRELAKAMP TVPMARAAFD
ALATTWRGKK QIAAADSYAE LMRAGFGPTM YKQVYEPYAA KLWGVTGDDI DIDQARRKAG
SQTMWGALVR SVRNSIASES LAYLYPRRGF GQLCETLADA AMEAGARIRL GAAAEHLTVD
AEGVSVSLAR SEFHGSAAER GGWSGEQHWA EGGTDIRAGH VFSTIPVPLL ARLTSPGAPY
EAVEASGKLR FRAILLVYAV HAGGRWTGCD VHYIPDGDTP VTRISEPANH RFSPDDPTER
TVLCFEIPCD IGDDLWAADE DQLANLIRET VRRLGLPQLN LEWVQVKRMR QVYPIYHKGY
REALADLEGW VESLPHVTTF GRLGLFTPDN THHALLMGYE AADALGTGQW DQQMWSEARD
RFTQHVVES
|
|---|
| |