Gene Caci_7452 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_7452 
Symbol 
ID8338822 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp8639157 
End bp8640281 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content69% 
IMG OID644960531 
Productspermidine/putrescine ABC transporter ATPase subunit 
Protein accessionYP_003118118 
Protein GI256396554 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.252559 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACCA CCCCTTCCGC GCTCTCCCCC ACCACGCCCG ACCCGTCCGC CACGCCCGCG 
GTACGGCTGG ACCGGATCAC CAAGAGGTTC GGCGGCGACA ACGACACTGC CGCCGCCGTC
GCCGATCTGA GCCTGGACAT AGCCCCCGGC GAGTTCTACT CGCTGCTCGG GCCCTCCGGC
TGCGGCAAGA CCACGACCCT GCGGATGATC GGCGGCTTCG CCGATCCGAC GTCCGGCTCG
ATCCTGCTCG CCGGACAGGA CGTGACGCGG TTGCCGCCGA ACAAGCGGAA CGTGAACACC
GTGTTCCAGA GCTACGCGCT GTTCGACCAC CTCTCGGTGG CCGACAACGT GGCCTTCGGC
CTCAAGCGCG CCGGCGTCGC CCGGGAGGAG ATCCGGCGGC GGGTCGGCGA GATGCTGGAG
CTGGTGCAGC TGACGACGTT CGCCGACCGC AAGCCGCGCA CGCTGTCCGG CGGTCAGCGC
CAGCGCGTCG CACTGGCCCG GGCCCTGGTC AACCGGCCGG CGGTCCTGCT GCTGGACGAG
CCGCTGGCGG CGCTGGACCT GAAGCTGCGC CGGCAGATGC AGATCGAGCT CAAGCAGATC
CAGCGCGAGG TCGGCATCAC CTTCGTGTTC GTCACCCACG ACCAGGACGA GGCGCTGACC
ATGTCCGACC GGGTGGCCGT GATGAACGCC GGACGCGTGG AGCACTGCGG GACGCCCGAG
GACGTGTATG AGCATCCTGA GACGAAGTTC GTCGCGTCCT TCATGGGGAC GTCGAACCTC
ATGACCGGCG TCTACCGGTC CGGCGCGGTG CAGATCACCG GCGGTCCGGC GATCGCCGTG
GGACCGTGCC CGGAGATCAC CGAAGGCAGC GAGGTCAGCA TCTCGATCCG GCCGGAGAAG
ATCTGGCTCT CGGACTTCGA GGCGGACATG CCGCGGGCTC GCGGCGTCAT CAAGGACACC
GTCTACTCCG GTCCGACCAC GACCTATCTG ATCGAGCTCG CGCCCGGCGT GACCGTGGCC
GCGCTGGAGC AGAACACCGC GCGGTCGCGG AACGAGGACC GCTGGGAGGG CGGGGAATCG
GTGGAGATCG CCTGGAAGCC GGAACACTGC CTGGTCCTGG CCTGA
 
Protein sequence
MSTTPSALSP TTPDPSATPA VRLDRITKRF GGDNDTAAAV ADLSLDIAPG EFYSLLGPSG 
CGKTTTLRMI GGFADPTSGS ILLAGQDVTR LPPNKRNVNT VFQSYALFDH LSVADNVAFG
LKRAGVAREE IRRRVGEMLE LVQLTTFADR KPRTLSGGQR QRVALARALV NRPAVLLLDE
PLAALDLKLR RQMQIELKQI QREVGITFVF VTHDQDEALT MSDRVAVMNA GRVEHCGTPE
DVYEHPETKF VASFMGTSNL MTGVYRSGAV QITGGPAIAV GPCPEITEGS EVSISIRPEK
IWLSDFEADM PRARGVIKDT VYSGPTTTYL IELAPGVTVA ALEQNTARSR NEDRWEGGES
VEIAWKPEHC LVLA