Gene Caci_7244 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_7244 
Symbol 
ID8338612 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp8421756 
End bp8423096 
Gene Length1341 bp 
Protein Length446 aa 
Translation table11 
GC content70% 
IMG OID644960325 
ProductRicin B lectin 
Protein accessionYP_003117914 
Protein GI256396350 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2273] Beta-glucanase/Beta-glucan synthetase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0192943 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTCAT CCCCACAGCA GTCACCACCC CGCACCGCCC GCAAACGCTT CCGGCGCCTG 
GCCGCCGTGG CCGCGCCGCT CGCCGTGGCG CTCGCGGCCT GGGCCGCGAC GCCGGACGGC
GCCGCGCAGG CCTCCGCGCC CCCGCCGCCC TCGGGCTGGA ACCAGGTGTT CCTCGACGAC
TTCGGCGGCG CCTCCGGCAG CGGCATCGAC GGCCAGTGGA AGTACGACAC CGGTCCGGGC
TCGAGCTTCG GCACCGGCGA GATCGAGACG ATGACGAACT CGACCAGCAA CGTCCATCTC
GACGGCGGCG GCAACCTGGA CATCACGGCG CAGGGCAGCG GCAGCAACTG GACGTCGGGG
CGGGTGCAGA CCACCAGCGC CAACGTCGGC GCCCCGGCCG GCGGCAAGCT CGAGGTCACC
GCCTCGATCC AGCAGCCGAC CGGAGGCCTG GGCTACTGGC CGGCGTTCTG GATGCTGGGT
CCGGGCCAGT GGCCGGAGAA CGGCGAGATC GACATCATGG AGGATGTCAA CGCCCTGTCC
GAGGTCGCCG GCACCATCCA CTGCGGCGTC GATCCGGGCG GTCCGTGCAA CGAGGGCAAC
GGCATCGGCA GCGGCCTGCG GGCGTGCGGC GGCTGCCAGT CCGGCTTCCA CACGTACACC
ATGATCCTGG ACCGGACGAA CACCTCGGCC GAGTCCATCG CGTTCTACCT CGACGGCAGC
CAGTACTTCT CGGTGAACGA GTCGCAGGTC GGCACCTCCA CCTGGCAGCA GGCCTACGAC
CACAACCTGT CGATCATCCT CGACCTGGCG ATGGGCGGCG CCTTCCCGAA CGGCGTGTGC
GGCTGCACGA CTCCGACCGG CTCGACCGCC TCCGGCGGCA CGATGCGCGT GGACTACGTC
GCGGCGTACA CCACCACCGG CAACGGCGGC GGCAACCCGC CGCCCCCGCC CGGCAGCGGT
CCGATCACCT CCGGCGTCGG CTCGAACATC TGCCTCGACG ACCGCTCGTC GAGCACGGCG
AACTACAACC CGGTGCAGAT CTACACCTGC AACGGATCCG CGGCGCAGCA GTGGTCGGTG
GTCCAGGCGG GCAGCACGCT GCACGTCCTG GGCAAGTGCC TGGACGTGTA CGCGGCCGGC
ACGGCGAACG GGTCGAAGGT CGACCTCTAC GACTGCAACG GCACCGGATC CCAGGTGTTC
GTCCCGCAGT CGAACGGGTC GCTGCTCAAC CCGCAGTCCA ACAAGTGCCT GGACGTTCCC
GGTGCGACCA CCGCGTCGGG CACGCAGGTG CAGATCTATG ACTGCAACGG CACCAACGCT
CAGAAGTGGA CGCTTCCGTA A
 
Protein sequence
MSSSPQQSPP RTARKRFRRL AAVAAPLAVA LAAWAATPDG AAQASAPPPP SGWNQVFLDD 
FGGASGSGID GQWKYDTGPG SSFGTGEIET MTNSTSNVHL DGGGNLDITA QGSGSNWTSG
RVQTTSANVG APAGGKLEVT ASIQQPTGGL GYWPAFWMLG PGQWPENGEI DIMEDVNALS
EVAGTIHCGV DPGGPCNEGN GIGSGLRACG GCQSGFHTYT MILDRTNTSA ESIAFYLDGS
QYFSVNESQV GTSTWQQAYD HNLSIILDLA MGGAFPNGVC GCTTPTGSTA SGGTMRVDYV
AAYTTTGNGG GNPPPPPGSG PITSGVGSNI CLDDRSSSTA NYNPVQIYTC NGSAAQQWSV
VQAGSTLHVL GKCLDVYAAG TANGSKVDLY DCNGTGSQVF VPQSNGSLLN PQSNKCLDVP
GATTASGTQV QIYDCNGTNA QKWTLP