| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7238 |
|---|
| Symbol | |
|---|
| ID | 8338606 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 8413706 |
|---|
| End bp | 8415130 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644960319 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_003117908 |
|---|
| Protein GI | 256396344 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCCT CGCCCGAGGC ACCCGCACCC GCGACAACTC CCGCGCCGCC GCCCTCGACC
CCGAACCCCT TCTCCTGGCG CTTCACCACT CCGCTGTTCC TCGGCTCAGC GCTCAATCCC
GTCAACAGTT CGCTGATCGC GACCGCGCTG CTGCCGATCG CGCGCGGCGT CGGCGTGCCG
ATCGGGCAGA CCGCGGCGCT CGTCACCGCG CTCTACCTCG CGAGTGCGAT CGCGCAGCCG
ACTGCGGGCA AGGCGGCCGA GGTCTTCGGG CCGCGGCGCG TGTTCCTCGC CGGCATCCTT
CTGGTCGCGG TAGGTGGGAT AACCGGTGGC TTCGCTCAGG GCCTGCTCAC CCTTGTCGTC
AGCAGAGTCC TGATCGGCCT CGGCACCTCC TGCGCCTATC CGACCGCCAT GCTGCTGATC
CGCCGTCGTG CCCGCGATGC CGGTCTCGGC AATCCGCCGG GTGCCGTGCT CGGCGGATTG
CAGATCGCGG GGATCGCCAC CGCGTCGCTC GGGCTGCCGA TCGGGGGTGC GCTGGTCGGG
TGGTTCGGGT GGCGGTCGGT GTTCTTCGCC AACGTGCCGG TCGCGTTGGT TGCGCTGGCT
GCGACGTTGA CGTGGGTCTC GCCCGACGGG CCGCTTCAGC GTCCGTTGCG GTGGCGGGAG
GTGGCCGCGC GCCTCGATGC GGTCGGCATC GCGGGGTTCG CCGCTGCCAT GATCGCGTTG
CTGCTGTTCC TGTTCTCGCT CCCGACGACG CATTGGTACC TGCTAGGCAT ATCCGTGGTC
CTGTGGATCG CGCTCGTGTT CTGGGAGCTG CGCGCCGCGG CGCCCTTCCT CGACGTCCGC
ATGCTCGCGT CCAACAAGGC GCTGACTCGC ACCTATCTAC GCTTCGGCCT CGCCATGCTG
TGCCTGTACG TGGTCCTGTA CGGCGTCACG CAATGGGTCG AAGGCGTCCG CGGCCTCAGC
GAGACCCAAG CCGGGCTGCT CCTGCTCCCC ATGACGCTCG TCTCCGGCCT CATCGTCTCG
CCGGTCTCGC GCCGCAACCT GGTGCGCGGG CCCGTCATCG CCGCGGCGGT CGCGTGCGTC
GTCGGCGCGG TGGGGACGCT CGTCCTCAGC GCCTCCGCCT GGATCGGCTG GGTCGTGGTG
CTCACGCTCG TCTTCGGGCT GGTCATGGGT TTCGCCGCCG CAGGCAATCA GACCGCGCTC
TACGCGCAGG CGCCCGCCGA TCAGCTCGGC ACGGCAGCCG GACTCCTGCG CACCTTCGGC
TACGTCGGCT CGATCGCCTC CTCGGCCATC ACCGGCATCG TCTTCCACAC CAGCGTCACC
GACCACGGCG TCCACCTGAT CGCCTGGATC ATGATCGGCG TCAGTGTCGT GCTGCTCCTG
GTCTCCGTCC TGGACCGCAC GCTCCCGAAG CGGACAGCGG CCTAG
|
|---|
| Protein sequence | MPASPEAPAP ATTPAPPPST PNPFSWRFTT PLFLGSALNP VNSSLIATAL LPIARGVGVP
IGQTAALVTA LYLASAIAQP TAGKAAEVFG PRRVFLAGIL LVAVGGITGG FAQGLLTLVV
SRVLIGLGTS CAYPTAMLLI RRRARDAGLG NPPGAVLGGL QIAGIATASL GLPIGGALVG
WFGWRSVFFA NVPVALVALA ATLTWVSPDG PLQRPLRWRE VAARLDAVGI AGFAAAMIAL
LLFLFSLPTT HWYLLGISVV LWIALVFWEL RAAAPFLDVR MLASNKALTR TYLRFGLAML
CLYVVLYGVT QWVEGVRGLS ETQAGLLLLP MTLVSGLIVS PVSRRNLVRG PVIAAAVACV
VGAVGTLVLS ASAWIGWVVV LTLVFGLVMG FAAAGNQTAL YAQAPADQLG TAAGLLRTFG
YVGSIASSAI TGIVFHTSVT DHGVHLIAWI MIGVSVVLLL VSVLDRTLPK RTAA
|
|---|
| |