Gene Caci_7237 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_7237 
Symbol 
ID8338605 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp8411970 
End bp8413709 
Gene Length1740 bp 
Protein Length579 aa 
Translation table11 
GC content73% 
IMG OID644960318 
Productprotein serine phosphatase with GAF(s) sensor(s) 
Protein accessionYP_003117907 
Protein GI256396343 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCACGAAT CAGAGCACGG GCACAACGGA GTGCTGACGT ACAAGATCGA TCTGCGGGAC 
CATCTGTCGT TCCTGAACGA GGCGACGGAC CGGATCGGCG CCGGCACGGA CATGGTGGCG
ATCGCGGTGC AGTTCGCCGC CGCGCTGGTC CCGCGGCTCG CCGACTTCGC CTCGGTGCAC
CTGCTGGACG CCTTGTTCGT GGACGGCGCC CCGGCTCCGC CGGCGCCCGG CGCGACGGCG
TCCAGCCTGG TGCGGCGCGT GGCGGTGGCG CATGACGAGC CGCCGGAGCG CTGGCTGTCG
CTGGTGCCGG AGGGCGCGGT GCAGATCATG CACGCCACGA GCCCCTGCCA CGAGGCGATG
GCCACCGGGA CGCCGGTGCA GCTGGACCGG GTCACGCCGG ACCGGGCCGT GGCGATGGCG
CTGTCCCACT CCCCCGGCGA CTTGTATCCG CTGGTCGCCG AGCGCGCATA TCTGGCGGTG
CCGATCGTGG TGCGCGGCCG GGTGCTGGGC TGCGTGGCGC TGACGCGGCG TCCGGAGCGC
GCGGAGTTCG ACGAGGTGGA CGTGCTGACC GTCGGGCAGC TGGCCGCGCA GGTGGCGCTC
GGCGTGGACA ACGCGCGGCT GTTCCGCGGG CAGGTGGCCA CGGCCGCGGA GTTCCGGCGC
GGGGTACTGC CGACGGCGCC GCCGACGCTG GCCGGGGTCG AGGTCGCGCA CCGGTATCTG
CCGGCGAATC CGGCGGTCGA GGTCGGCGGC GACTGGTTCG ACACGATCGC GTTGCCGGGG
AGCCGGGTGG CGATCGTGAT CGGCGACGTG ATGGGGCACG GCGTGCGCTC GGCGGCGGTG
ATGGGGCATC TGCGGATCGC GGTGCAGACG CTGGCCGCGC TGGACCTGCC GCCGGGGCAG
CTGCTGCGCC AGCTCGACAG TTTGGCGCTG CAACTCGGCG ACGACCATCT GGCGACGTGC
TTGTACGCGG TCTACGACCC GATCGCGTCG TGCTGCGTCA TCGCCAACGC CGGGCATCTG
GCGCCGATGC TGGTGCGCGC CGACGGCCGG GTGGAGCGGG TCGAGGTGCC CAGCGGCGCG
CCGATAGGGG TCGGGGGCGT GGCGTTCGAC ACCGCCGAGA TCCCGATCCG CGACGGGGAC
GTCCTGGTGC TGTACACCGA CGGTCTGGTC GAGGCGCGCG GCGACGACAT CGACGACCGG
ATTGCGGCCC TCGGCGAATG TCTGGAGCTG GCGGCGCGGC CGGACGCCGA TCCCGAGGCG
CTGTGCGACA CGCTGCTGAC GATGCTCGAC GGGGACAAGC ACGAGGACGA CGTCGCGCTG
CTCGCCGCGC GGCTGAAGGG GATTCCGGCG GAGAGCATCG CGAACTGGCT GTTGGCGCCG
CTGCCGCCGA CGGTGCCGCG GGCGCGCGGG CTGGTGCGGC GGGCGATGGC GGGGTGGGAC
CTGCCGGAGA GCGTGCGGGA CACCACCGAG CTGCTGGCCA CGGAGCTGGT GACGAACGCG
GTCCGCTACG CGCACGGGCC GATCGAGCTG CGGCTGCTGC GCACGCGCAC GCTGCTCTGC
GAGGTGCGCG ACGACGACCA CTTCCTGCCG ATCCTGTTGG AGGCCGGCGA TCTGGACGAG
GGCGGGCGGG GGTTGTTCCT GGTCAGTCAG CTGGCGCAGC GGTGGGGCGT GAGCCGGACG
GCGAACGGGA AGGTGGTGTG GTTCGAGGTG GCGCTGGAGG AGGAGCCCGT TTGGGCCTAG
 
Protein sequence
MHESEHGHNG VLTYKIDLRD HLSFLNEATD RIGAGTDMVA IAVQFAAALV PRLADFASVH 
LLDALFVDGA PAPPAPGATA SSLVRRVAVA HDEPPERWLS LVPEGAVQIM HATSPCHEAM
ATGTPVQLDR VTPDRAVAMA LSHSPGDLYP LVAERAYLAV PIVVRGRVLG CVALTRRPER
AEFDEVDVLT VGQLAAQVAL GVDNARLFRG QVATAAEFRR GVLPTAPPTL AGVEVAHRYL
PANPAVEVGG DWFDTIALPG SRVAIVIGDV MGHGVRSAAV MGHLRIAVQT LAALDLPPGQ
LLRQLDSLAL QLGDDHLATC LYAVYDPIAS CCVIANAGHL APMLVRADGR VERVEVPSGA
PIGVGGVAFD TAEIPIRDGD VLVLYTDGLV EARGDDIDDR IAALGECLEL AARPDADPEA
LCDTLLTMLD GDKHEDDVAL LAARLKGIPA ESIANWLLAP LPPTVPRARG LVRRAMAGWD
LPESVRDTTE LLATELVTNA VRYAHGPIEL RLLRTRTLLC EVRDDDHFLP ILLEAGDLDE
GGRGLFLVSQ LAQRWGVSRT ANGKVVWFEV ALEEEPVWA