Gene Caci_7122 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_7122 
Symbol 
ID8338489 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp8284718 
End bp8285602 
Gene Length885 bp 
Protein Length294 aa 
Translation table11 
GC content71% 
IMG OID644960203 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003117793 
Protein GI256396229 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.786552 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCCGG CCGCCACCGA CACCTTCGTC GGGCTTCGCA ACCTGCTGTT CACCGTCGCC 
TACGAGATCC TGGGCTCGGC CGCCGACGCC GAGGACGTGC TGCAGGAGAC GTGGCTGCGG
TGGGTGGAGG TGGATCTGGA GCAGGTGCGC GACGAGCGCG CCTACCTGAT CCGCATCACC
ACCCGCCAGG CGCTGAACCG GCTGCGCACG ATGAAGCGGC GGCGCGAGGC CTACGTCGGC
ACCTGGCTGC CCGAGCCGCT GCTCACCGCC CCCGACGTGG CGGAACACGT CGAGGTCGCC
GAGAACCTGT CGATCGCGCT GATGCTGGTG CTGGAGACCC TCTCGCCGAC CGAGCGCGCG
GTCTTCGTCC TGCGCGAAGC CTTCGACGTC GGCTACGACG AGATCGCGGA GGCCGTCGGC
AAGACCCCGG CAGCCGTCCG CCAGATCGCC CACCGCGCCC GCCAGCACGT CGACGCCCGC
CGCCCCCGCA CCACCGCCAC CCAGCGCACG GCCCAGGCCG CGGTGGCCGC GTTCCAGCGC
GCACTGGAGA CACAGGACGT CCAGGCCCTG ATGGACGTCC TCGCGCCACA AGCGGTCCTG
ATCGGCGACG GCGGCGGCAT CAAGCGCGCC GGCCTCCGAC CCGTCACCGG CGCGGCGAAG
GTGATCCGCT ACGTGCTCGG CGGCATCCGC AAGTCCGGCG TCACGGTCAC CACCGAGCTG
ACCGACGTCA ACGGCAACCC GGGCCTCCTG GTCCGCGTGG ACGGCGAAGT CGACGGCATC
ATGGCCCTGC ACGTCGAGGA CGACCGGATC GCCGGGATGT ACTACGTGCT GAATCCGGAG
AAGCTGACGC GGGTCGGCGG GGAGACGGAG GTGGCTTGGC GGTGA
 
Protein sequence
MNPAATDTFV GLRNLLFTVA YEILGSAADA EDVLQETWLR WVEVDLEQVR DERAYLIRIT 
TRQALNRLRT MKRRREAYVG TWLPEPLLTA PDVAEHVEVA ENLSIALMLV LETLSPTERA
VFVLREAFDV GYDEIAEAVG KTPAAVRQIA HRARQHVDAR RPRTTATQRT AQAAVAAFQR
ALETQDVQAL MDVLAPQAVL IGDGGGIKRA GLRPVTGAAK VIRYVLGGIR KSGVTVTTEL
TDVNGNPGLL VRVDGEVDGI MALHVEDDRI AGMYYVLNPE KLTRVGGETE VAWR