| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7115 |
|---|
| Symbol | |
|---|
| ID | 8338482 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 8277513 |
|---|
| End bp | 8278976 |
|---|
| Gene Length | 1464 bp |
|---|
| Protein Length | 487 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644960196 |
|---|
| Product | fumarate hydratase, class II |
|---|
| Protein accession | YP_003117786 |
|---|
| Protein GI | 256396222 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0114] Fumarase |
|---|
| TIGRFAM ID | [TIGR00979] fumarate hydratase, class II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.257416 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAACC CGGAGCAGGG GCAGACCCCT CCTGAGATCC TCGACCTCCC TGTCGGCATC
GACGCCGGCG GGATCCGGCG CGAGACCGAC GCGATGGGCG CCGTCGACGT CCCGGCTGAC
AGGTACTGGG GCGCGCAGAC CCAACGCTCG CTGGAGCATT TCACAGTCGG CGACGATCAC
ATGCCACCGG GGATCCACCA CGCCTACGGA TACGTCAAGA TGGCCGCCGC GCTGGTCAAC
GGCGAGGCCG GGCGGCTGCC GCGCTGGATG GCCGATCTGA TCGCCCGGGT CGCCGCCGAG
GTGATCGCCG GCGACCTCGA CGAGCACTTC CCGCTCTACG TCTGGCAGAC CGGCTCCGGC
ACGCAGACCA ACATGAACGT CAACGAGGTC ATCAGCAACC GCGCGATCCA GCTGGCGGGA
GGCACGCTCG GCAGCAAGGC GCCGGTCCAC CCCAACGACC ACGTCAACCT CGCGCAGTCC
TCCAACGACA GTTTCCCGAC CGCGACCCAC GTCGCGGCGG TGCTGGCGCT GCAGAACCAC
GTGCTGCCCG AGCTGCGGAA ACTGCACACG GCGCTGGACG CCAAGGCGCG GGAGTGGGCC
GACATCCCCA AGACCGGCCG CACGCACCTG CAGGACGCCG TCCCGCTCAC CGTCGGCCAG
GAGTGGTCCG GCTACGCCGC GCAGATCGCC GCCGCGACCG ACCGCCTGGA GTCGGCGCTG
CCCGGGCTCT ACGAGCTGGC CGCGGGCGGG ACCGCCGTCG GCACCGGCCT GAACGCCCCG
CCCGGATTCG CCGAGCGCTT CGCCGCCGAA CTCGCCGAAC TGACCGGCCA CCCCTTCGTC
ACCGCACCCA ACAAGTTCGC CGCCCTGGCC GGCGCCGAGG CGATGGTCGC GGCCTCGGCG
GGCCTGCGCG GCGTGGCCGT CCCCCTGCTG AAGATCGCCA ACGACATCCG CTTCCTGGGC
TCGGGCCCGC GCAACGGCCT CGGCGAACTG CGCCTCCCGG AGAACGAACC AGGCAGCTCG
ATCATGCCGG GCAAGGTCAA CCCGACGCAG TGCGAAGCCA CGATGATGGT CTGCCTGAGA
ATCCTCGCCG ACGACACCGC CCTGGCCACC GCCGCCGCCA TGGGCAACTT CGAACTCAAC
ACCATGCGCC CCCTGATCGC CTCCTCCTTC CTCCACTCCG CCCAGATCCT CACCGACGCC
ACCCGCAACC TGCGCGTCTT CTGCATCGAA GGCGTCGAAC TCGACCGCGA GCGCATCGAC
CACGACCTGG GCCGCTCCCT GATGCTGGTG ACCGCCCTGA CCCCGGAGAT CGGCTACGAC
CGCGCCGCGC AGATCGCGCA CACCGCCGAC GCCGAGGGCA CGACCCTGCG CGAGGCGGCG
GTGGCGAGCG GATGGCTGAC GGCGGAGGAG TTCGACCGGA TCGTGGATCC TCGGGCGATG
ACGGGGCGGG GCGGGGCTGG CTGA
|
|---|
| Protein sequence | MTNPEQGQTP PEILDLPVGI DAGGIRRETD AMGAVDVPAD RYWGAQTQRS LEHFTVGDDH
MPPGIHHAYG YVKMAAALVN GEAGRLPRWM ADLIARVAAE VIAGDLDEHF PLYVWQTGSG
TQTNMNVNEV ISNRAIQLAG GTLGSKAPVH PNDHVNLAQS SNDSFPTATH VAAVLALQNH
VLPELRKLHT ALDAKAREWA DIPKTGRTHL QDAVPLTVGQ EWSGYAAQIA AATDRLESAL
PGLYELAAGG TAVGTGLNAP PGFAERFAAE LAELTGHPFV TAPNKFAALA GAEAMVAASA
GLRGVAVPLL KIANDIRFLG SGPRNGLGEL RLPENEPGSS IMPGKVNPTQ CEATMMVCLR
ILADDTALAT AAAMGNFELN TMRPLIASSF LHSAQILTDA TRNLRVFCIE GVELDRERID
HDLGRSLMLV TALTPEIGYD RAAQIAHTAD AEGTTLREAA VASGWLTAEE FDRIVDPRAM
TGRGGAG
|
|---|
| |