| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7087 |
|---|
| Symbol | |
|---|
| ID | 8338454 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 8244940 |
|---|
| End bp | 8246454 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644960168 |
|---|
| Product | methylmalonate-semialdehyde dehydrogenase |
|---|
| Protein accession | YP_003117758 |
|---|
| Protein GI | 256396194 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.836001 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.143304 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAGC ACGTCACCCA CTGGATCGAC GGCCGCGCGT GGGAGGGCGC CACCGCCCGC
CACGGCGACC TGCACGACCC GGCGACCGGC GCCGTCACCG GGTCGGTGGA CTTCGCCGCG
GTGAAGGAGG TCGACGACGC GGTGGCCGCG GCCGCGGCGG CGTTCCCCGG CTGGCGGGCG
GCGTCGGTGG CCAAGCGCAC GACGGTGCTC TTCGCGTTCC GGGAGCTGCT GAACCAGCAC
AAGGACGACC TCGCCGCGCT CATCGTCTCC GAGCACGGCA AGGTGCACTC CGACGCGCTC
GGCGAGGTGG CGCGCGGGCT GGAGGTCGTG GAGTTCGCCT GCGGGATCGG CACGATCCTC
AAGGGCGCGT TCAGCGAGTC CGCCTCCACC GGCGTGGAGG TGTACTCGAT GCACCAGCCG
CTGGGACCGG TGGCGATCAT CTCGCCGTTC AACTTCCCGG CGATGGTGCC GATGTGGTTC
TTCCCGATCG CGATCGCCGC CGGCAACACC GTGGTGCTCA AGCCGTCGGA GAAGGACCCG
TCGGCGGCGG TGTTCCTGGC CGAGCTGTGG AAGCGCGCGG GGCTGCCCGA CGGCGTGTTC
AACGTCGTGC ACGGCGACAA GGTGGCGGTG GACCGGCTGC TGGAGCACCC CGACATCCAC
GCTGTGTCCT TCGTCGGCTC CACGCCGATC GCGCGCTACG TCTATGAGAA CGGCACCCGC
TACGGCAAGC GCGTGCAGGC TCTCGGCGGC GCCAAGAACC ACATGGTGGT CCTGCCGGAC
GCGGACCTGG ACCTGGCCGC CGACGCCGCG GTGTCGGCCG GCTTCGGCGC CGCGGGCGAG
CGCTGCATGG CGGTCTCGGT GCTGGTCGCG GTGGACCCGA TCGGCGACGA GCTGGTCGCC
AAGATCACCG AGCGCATGGC GAAGCTGAAG GTCGGCCCGG GCTGCCTGCC GGACACCGAG
ATGGGCCCGC TGGTCACCGG CGCGCACCGG GACAAGGTCA CCTCCTACCT CGACGCGGGC
GTCACCGCCG GCGCGGACCT GGTGGTCGAC GGCCGCGGCC ATTCGATCGG CGGCGCGGAG
GAGGGCATCG ACACAGCAAA CGGCTTCTGG CTCGGCCCGA CCCTGTTCGA CAAGGTCACC
CCCTCGATGA GCGTCTACAC CGACGAGATC TTCGGCCCGG TCCTGTCCGT CGTCCGCGCC
CCCTCCTACG ACGAGGCACT GGCCCTGGTG AACAGCAACC CCTACGGCAA CGGCGTCGCG
GTGTTCACCA ACGACGGCGG CGCCGCAGCC CGCTTCCGCG ACCAGGTCGA GGTCGGCATG
GTCGGCGTGA ACGTCCCCAT CCCGGTCCCC GTGGCCTACC ACTCCTTCGG CGGCTGGAAG
GCCTCCCTGT TCGGCGACAC CCACGCCTAC GGCCCGCACG GCGTGCACTT CTTCACGCGC
ACCAAGGCGG TCACGCAGCG GTGGCTGGAC CCGAGCCACG GCGGTGTGAA CCTCGGGTTC
CCGACGAACG GCTGA
|
|---|
| Protein sequence | MTKHVTHWID GRAWEGATAR HGDLHDPATG AVTGSVDFAA VKEVDDAVAA AAAAFPGWRA
ASVAKRTTVL FAFRELLNQH KDDLAALIVS EHGKVHSDAL GEVARGLEVV EFACGIGTIL
KGAFSESAST GVEVYSMHQP LGPVAIISPF NFPAMVPMWF FPIAIAAGNT VVLKPSEKDP
SAAVFLAELW KRAGLPDGVF NVVHGDKVAV DRLLEHPDIH AVSFVGSTPI ARYVYENGTR
YGKRVQALGG AKNHMVVLPD ADLDLAADAA VSAGFGAAGE RCMAVSVLVA VDPIGDELVA
KITERMAKLK VGPGCLPDTE MGPLVTGAHR DKVTSYLDAG VTAGADLVVD GRGHSIGGAE
EGIDTANGFW LGPTLFDKVT PSMSVYTDEI FGPVLSVVRA PSYDEALALV NSNPYGNGVA
VFTNDGGAAA RFRDQVEVGM VGVNVPIPVP VAYHSFGGWK ASLFGDTHAY GPHGVHFFTR
TKAVTQRWLD PSHGGVNLGF PTNG
|
|---|
| |