| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7001 |
|---|
| Symbol | |
|---|
| ID | 8338367 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 8117791 |
|---|
| End bp | 8122767 |
|---|
| Gene Length | 4977 bp |
|---|
| Protein Length | 1658 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644960081 |
|---|
| Product | Beta-ketoacyl synthase |
|---|
| Protein accession | YP_003117672 |
|---|
| Protein GI | 256396108 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3321] Polyketide synthase modules and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.39366 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGAGG ACAGACTGCG CGCCTATCTC AAGCGCGTCA CCGTCGACCT CGCCGAGGCG
CGCCGCCGCC TGGCCGAGGC GGACGGCGAT CGGCACGAGC CGATCGCCGT GATCGGGATG
GCCTGCCGGT ACCCCGGCGG CGTCCGGACG CCCGAGGAGT TCTGGACCTT GCTGAGCGAG
GGCCGGGACA CCGTCGCGGA CGTGCCGAAG GCGCGCTGGG ACATCGAGGA GTACTACGAC
CCCGAGCGCA GTTCGGTCGG CGGCGTCTAC ACCAAGCAGG GCGCCTTCCT GGACGACATC
GCAGGGTTCG ATGCCGGGTT CTTCGGGCTC TCGCCGCAGG AGGCGTTCCG GATGGATCCC
CAGCAGCGCC TGCTGATGGA GCTGATGTGG GAAGGGATGG AGGACGCCGG TACGACACCG
GCGTCGCTGG CCGGAAGCCG GACCGGCGTG ATGGTCGGGC TGATGGACAC CGTGCAGTAC
GGACGGCTGG AGATGGAGCG GACCGGTCCT TCGGTGGCCG CGGATCCGCT GTTCGGGCAA
GGGGTCTCGA CGTCGGTCGC GGCCGGACGG CTGGCGTACC AGTACGACCT GCGCGGCCCG
ACGCTGACCA TCGACACGGC GTGCTCCTCC TCGCTGGTCG GCGTGCACCT CGCCGCCGAG
GCGCTGCGGC GCGGCGAGTG CGACATGGCG GTCGCGGCGG GCGCGTACCT GGTGATCCGC
CCCGACACCT TCGTGCAGGG CTGCGCGACC TCGATGCTCG CGGTCGACGG ACGCTGCAAG
ACCTTCGACG CCTCCGCCGA CGGCTACGTG CTCGGCGAGG GCGGCGGGCT GGTGGTGCTG
GAGCGGCTGT CCTCGGCGCT GGCGAATGGC CGCCGGATCC GCGCGATCGT GCGCGGCTCG
GCGGTCAACC AGGACGGCCG TAGCAATGGC CTGACAGCAC CGAACCGCGG CGCGCAGGTC
GATGTGATCC GGCGCGCGCA GGCGGCGGCG GGCGTCGCCC CTGACGAGGT CGCGTACGTG
GAGGCGCACG GCTCCGGCAC GAAGCTCGGC GACGCGATCG AGCTCTCGGC GCTGCACGAC
GTGTTCGCCA CCTCGCGCGA CGCCGAGCGT CCGCTCCTGG TCGGCGCGGT GAAGACGAAC
ATCGGCCACA CGCAGTCGGC GGCGGGCGTC GCCGGACTGA TCAAAACGGT GCTGGTGCTG
GAGAACGGCG TCGCACCGGC GAACCGGAAC CTGGAGGATC CCTCGGACGC CATCCCGGGG
GACGGCACGG TGCGGCCGCT CGCAGCGGCT GCGGACCTGC CCGCGGGGCG GGTGGTGGCC
GGGGTGAGTT CGTTCGGCTG GTCCGGGACG AACGCCCATG TGGTGGTGGA GACGGCGCCG
GCGGCGGGGG AGGCGGAAGA GGGAGACGGT CAGGGGGCTG ATGGTCTCGC CGCGGACCCG
CTGCCGGCGC GCACGAACGG TTTCATCACG TTGCCGATAT CGGCCGCGAG CACGACTGCT
TTGCAGGAGC GTGCCGGCGG CCTGGCAACG GTTCTGACTG AGCGGCCGGA TGTGGACTTG
GCCGATATCG CCCACACCCT GCAGCACGGC CGAGCCGGAC TCGACTACCG AGCCGGCGTG
GTCGCCCTCG ATCGCGCCGA TGCCATTCGC CAGCTGACAG CACTCACTTC TGGCATCGAG
GCGAAGCGGC GCCCCAAGAT CGCCTTCCTA CTCCCTGGAA CCGGCGACCA ATACGCCGGC
TTGGGTCGCG AGCTCTATTC CTCAGAGCCC GTATACGCCG CCGCCATCGA CGAGTGCCTG
ACCATCGCCG AGGAGCGGTG CGGCGTCGAT CTTCGCCCTC TGATGTTCTC CTCGCCATCC
ACCGCCGCAT CCGGCGATCT GGCTGCTCTG CTCGGGCGCG AGAACACTCC CGCCTCTGAG
CCGGATCCGC TCGCGCACGC CGAGCTCTCC CATCCCTACC TGTTCACCGT CGAATACGCG
CTCGCGAAGC TGCTCGAAGC GTGGGGCGTG CGGCCGGACG TGCTGGTCGG CTACAGCCTC
GGCGAGTACG TCGCGGCGTG CCTGGCCGGC GTGCTGACGC TCGGCGACGC GCTGCACGTG
GTGGTCGAGC GGGCGCGGCT GATCGCCACG GCCCGGGCCG GGCGGATGCT CGCGGTCGCC
GCCGACGAGG CGCGCGTGCG CTCCGCGCTG GCCGAGAGCG GGGCGCGGGT GGACGTCGCG
GCGCTGACCG GACCGACGAT GACGGTCGTC AGCGGTACCG AGGACCAGGT CGACGTGCTC
GCCGAGGCGC TGCGCGGGGC GGGGGTGGCG TGCCGTCCGC TGCGCAGCGA GCACGCGTTC
CACTCCTCGC TGCTGGCGCC GGTGCGCGAC AAGCTGGCGG CGCTGCTGGA CTCGGTGCCG
CGCGCGGTTC CGACGACCAC GATCGTGTCG AACACCACCG GCAGCGCGCT GACCGCCGAG
CAGGCGGCGT CGGGGGAGTA CTGGGGCGAC CACCTGGTCA GCCCGATCCG CTTCGCCGAC
AGCGTGCGCT ACTGCGTGGA GCAGGGCGTT GACGTCTTCA TCGAGCTCGG CGCCGGCGCC
ACCCTCGGCG GCCTGGTCCG CCAGAACCTC GCCGGCGCCG GTGGCGCGGC GGTGGTCGGG
ACGCTGCCCG CCGCCTGGTC GGGCACCGCT GGCGCGCCGG ACGTGCGGCT CGACATGGCG
GGCACGCGTG CCCGGCTGTG GGAGCAGGGG CTGCCGGTGG TGTGGCCCGA AGGCGGACGC
ACGGTCAGCC TGCCGCCGTA TCCGTTCCAA CGCACGGCTT TCTGGCCGGA ACAGAACCCT
GATGCACTCG CGACGGACCG CTCGAGGCCT TCCCGCCCCA CGGACCTGGC ATACGTACCG
GCATGGCGCC GCGACGTCAC CGGCAGCGCC CCGAATGCTC TCCCGCTGGA CGGCCCACTG
GTGATCTTCG CCGCCGACGA AGGACTCGCC GACCTCGCCG AGGCGGCGGG CGTCCCGGTG
ATCGAGGTCA TCCCCGGCAC CGAGCTCAAG CGCGAAGGAC GCCGCCTGAC GATCGACATC
GCGACCCCCG AGCACTACCG CGAAGCCTTC ACCGGCCTCC CCGCCGACGG ACCCCTGCAC
GTAGTCCACG CCTGGAGCAC CCGCACAACA GCCGCCGACG ACGCCGCACT CCGCCACTCG
ATCAAGCTCG GCTTCGACAG CCTCCTACTG ACAGTGCAAG CACTCGGCGC ACTGCCCACG
CCCCGCCCGA TCCACCTGCT GACAGTCAGC CGCAACGCGC TGGACGTCCA CGGCGGCGAC
GCAACCGCCC CCCACCAGGC AGCCGTCCAC GGCCTCGGGC GGGTGGTCCA CCACGAAATC
AAAACCCTGA CCTGGCACGG CATCGACCTG GACGACGCTC ATGGTCCGGT AGATCTGGTC
GCCGAACTCT TGACGCCAGA TCCCGAACCC ACCCTCGCCG CCCGCCGCCG AGGCCGCCGC
TGGACCCAGG ATTGGGCCGA GCTGCCGATC AGCGAGAGCG CCACGGCGGC TGGTTCTGCT
CGAACCTCGG GCGCGACCGC GCTCGCGACC CCGGCTGGCT CTGCGGGAAC CTCAGCTGCG
ACCGCCTCCC CGGCTGGTTC TGCTGGAATC TCGGGCGCGA CCGCCACCGA GACCGCGGCT
GGTTCTGCTG GAGCCTCAGC GGTGACCGTC TCCCCGGCTG GTTCTGCTCG AACTTCGGGC
GCGACCGCCA CCGAGACTGT GGCTGGTTCT GCGAAAACCT CAGCCGCGAC CGCCCCCGCG
GCTGGTGCTG CGGACACCCT GCATAGGGCT GCCACTCCCT GGCGCCCCGA AGGCACCTAC
CTCATCACCG GCGGCACCCG AGGCCTCGGC CTCACCCTCG CGCACCACCT CGTCCGCGCC
GGAGTCCGCA GGCTTGCCCT CGTCGGTCGT AGCCGCCCCG ACCGCACCGC TCCCGGTATC
GCAGCCCTCG AAGCCGTCGG TGCCGAGGTT CTCCTCCTCG CCGCCGACGC TGGCGTGCCC
GACGCCCTGC GCGCCGCCCT GACCGAGACC CGTCGTCACT TCGGCGCGCT CACCGGTGTC
ATCCACGCCG CGGGACTCCC GGCCGGCGGC ATGGCTCAGC GGCGCGCGGT CGCCGATGCC
GAAAGCGTCC TCGCGCCCAA GATCCTCGCG ATGGGACCGC TGGCCGAACT CGTCGGTCCG
GCCACGCCCG AAGCTGAGCG GCCCGAACTC CTCGTCCTGT ACTCCTCCGC GGTCACCGTC
TTCGGCGGCA TCGGTGAGGG CGATTACTGC GCGGCCAACA CCGTCCTGGA CGCCTACGCC
GCCGCTCTCG CGGCCGACGC CCCGACCACC AGAATCGTCT CCGTAGCCTG GGGTCCCTGG
CTCCATGACG CCTGGCAGTC CGCCGCTCCC GCCAGCGGCC TGGCCGACCG CGCCGCCGCC
TACCGTCGCC GCTACGGCTT CAGCGACGAC GCCGGCTGCG CCCTCCTGGA CCGCATCCTC
CTCAGCGACG CCGGAATCGG CAGTGTCATC GCCGTCCGGC AGCGCCTGGA GGACTCGCGC
CGGGAGTGGG CTGCGATGGT CGACCTCGAT TCCCTCGTGG ACGCCAGCGC TGTCGCCCCG
GCGACCGAGC GCTTTCCGCG TCCGCAGCTG CGTACCGAGT ACGTCGCGCC GCGCAGTGAA
CGTGAGCGGG CCGTGGCCGA GATCTGGCAG GCCTATCTCG GCATCGAGCG CGTGGGGGTG
CACGACCCGT TCTTCGACCT CGGGGGGAAC TCGCTGGTCG GGATGGCCAT GGTGCTGGCC
GTCGAGAAGG AGCTGGGTCT GGCGATCGCG CCGGCCCTGC TGTTCGAGCA CCCCACCGTC
GCGGCGTTCT CCGCCGCGCT GGATCCCGCC GGGGGCAAGG CCGCCGCGCG GGAGCTGATC
GCCACGTCTT CGGCCCGGGG GCATCGCCGC CGCCGGGCCC GTATGGGAAA TGACTGA
|
|---|
| Protein sequence | MTEDRLRAYL KRVTVDLAEA RRRLAEADGD RHEPIAVIGM ACRYPGGVRT PEEFWTLLSE
GRDTVADVPK ARWDIEEYYD PERSSVGGVY TKQGAFLDDI AGFDAGFFGL SPQEAFRMDP
QQRLLMELMW EGMEDAGTTP ASLAGSRTGV MVGLMDTVQY GRLEMERTGP SVAADPLFGQ
GVSTSVAAGR LAYQYDLRGP TLTIDTACSS SLVGVHLAAE ALRRGECDMA VAAGAYLVIR
PDTFVQGCAT SMLAVDGRCK TFDASADGYV LGEGGGLVVL ERLSSALANG RRIRAIVRGS
AVNQDGRSNG LTAPNRGAQV DVIRRAQAAA GVAPDEVAYV EAHGSGTKLG DAIELSALHD
VFATSRDAER PLLVGAVKTN IGHTQSAAGV AGLIKTVLVL ENGVAPANRN LEDPSDAIPG
DGTVRPLAAA ADLPAGRVVA GVSSFGWSGT NAHVVVETAP AAGEAEEGDG QGADGLAADP
LPARTNGFIT LPISAASTTA LQERAGGLAT VLTERPDVDL ADIAHTLQHG RAGLDYRAGV
VALDRADAIR QLTALTSGIE AKRRPKIAFL LPGTGDQYAG LGRELYSSEP VYAAAIDECL
TIAEERCGVD LRPLMFSSPS TAASGDLAAL LGRENTPASE PDPLAHAELS HPYLFTVEYA
LAKLLEAWGV RPDVLVGYSL GEYVAACLAG VLTLGDALHV VVERARLIAT ARAGRMLAVA
ADEARVRSAL AESGARVDVA ALTGPTMTVV SGTEDQVDVL AEALRGAGVA CRPLRSEHAF
HSSLLAPVRD KLAALLDSVP RAVPTTTIVS NTTGSALTAE QAASGEYWGD HLVSPIRFAD
SVRYCVEQGV DVFIELGAGA TLGGLVRQNL AGAGGAAVVG TLPAAWSGTA GAPDVRLDMA
GTRARLWEQG LPVVWPEGGR TVSLPPYPFQ RTAFWPEQNP DALATDRSRP SRPTDLAYVP
AWRRDVTGSA PNALPLDGPL VIFAADEGLA DLAEAAGVPV IEVIPGTELK REGRRLTIDI
ATPEHYREAF TGLPADGPLH VVHAWSTRTT AADDAALRHS IKLGFDSLLL TVQALGALPT
PRPIHLLTVS RNALDVHGGD ATAPHQAAVH GLGRVVHHEI KTLTWHGIDL DDAHGPVDLV
AELLTPDPEP TLAARRRGRR WTQDWAELPI SESATAAGSA RTSGATALAT PAGSAGTSAA
TASPAGSAGI SGATATETAA GSAGASAVTV SPAGSARTSG ATATETVAGS AKTSAATAPA
AGAADTLHRA ATPWRPEGTY LITGGTRGLG LTLAHHLVRA GVRRLALVGR SRPDRTAPGI
AALEAVGAEV LLLAADAGVP DALRAALTET RRHFGALTGV IHAAGLPAGG MAQRRAVADA
ESVLAPKILA MGPLAELVGP ATPEAERPEL LVLYSSAVTV FGGIGEGDYC AANTVLDAYA
AALAADAPTT RIVSVAWGPW LHDAWQSAAP ASGLADRAAA YRRRYGFSDD AGCALLDRIL
LSDAGIGSVI AVRQRLEDSR REWAAMVDLD SLVDASAVAP ATERFPRPQL RTEYVAPRSE
RERAVAEIWQ AYLGIERVGV HDPFFDLGGN SLVGMAMVLA VEKELGLAIA PALLFEHPTV
AAFSAALDPA GGKAAARELI ATSSARGHRR RRARMGND
|
|---|
| |