Gene Caci_6954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6954 
Symbol 
ID8338320 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp8032295 
End bp8035312 
Gene Length3018 bp 
Protein Length1005 aa 
Translation table11 
GC content72% 
IMG OID644960035 
Producttranscriptional regulator, LuxR family 
Protein accessionYP_003117626 
Protein GI256396062 
COG category[R] General function prediction only 
COG ID[COG3899] Predicted ATPase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGGCGG GAAAGCTCGT CGGGCGAGAG CGGGAACTCG GCGAATTGTG CGCGCTCGTG 
GACGCCGCGT CGGCCCAAAG GCCGCGCATC GTCCTGGTGT CCGGGGAACC GGGGGTCGGC
AAGAGCCGCG TCATCGAGGA GTTCGCGGGC CGGGCACGCG AGAAGGGCGC CATCGTGCTG
CGCGGAGCGT GTCTGGATCT GGGCCGCGGC GACATCCCCT ACCTCCCTCT GGTCGAGGCA
TTGCGGCTGA AGGCGAGGCA GCAGAGCGGG GCGCACACGC GCGCGGCGGC CGGCCCGGTC
TGGGACGAGT TGTCCGGCTT GATCAACGGC TTCACCGGCG CCGGGGGTGG CGGCCGCACC
GAAAGGTTCG GGGTGCAGCC CGTCTACGCC GCGCTGCTTC GCATGCTGGA CCAGCTGGGC
GCCGCGGCGC CCGTGGTGCT CGTGTTCGAG GACATCCACT GGGCCGACCA GTCCACCCTC
GACTTGGTCT CCTTCCTGTC CCGGGCCATG TCGGACGAGC GTGTCCTGCT GGTGTGCAGC
CACCGCGCGG GCATGCCGGC CGGCCATCCG ACGCGGATCC TGCTCGCCGA GCCGGACTTC
GGCCGCCGGG TCCGCCGCGT GGCCGTGCCG CCCTTCACAG AACCCGAGCT CCTCCGCTTC
CTGGAGTCCC TGGGCGGCGA CGTCGACGCG GACATGGCGC GCGCGTGCTT CGAGCGGTCC
GAGGGCAACG CGTTCTTCGC CCAGCAGCTC TACGAGTCCG GCGCGCTCAC CGATCAGGCG
GCCGGACACC TTCCCGTCTC CGTCAAGGAG CTGATGCTGG CGCGCCTCGG AACGCTGAGC
ACTGACGCCG ACCGCGTCAT GCGGGTCGTC GCGACCGCCG CGCGCCGGGT GAGCGGCGAT
CTGATCGCCG CGGTGTGCGG GCTCGACGAC GAGTCGCTGG ACCAGGCCCT GCGCGAGTGC
CTGGACGCAG ACACGCTCGC CGCCGATCCG ATGGACGACG TCTACGCCGT GCGGCACGCC
CTGATGCGGG AGGCCATCTA CGAGCGGATG TCTCCCCGAG AACGGATACG GCTGCACACT
GCTATGGCCG AGGCGCTGAC CGCCGACCCC ACCCTTTCCC TGGCGGACGG CCGGAGCGCC
GCGGTCGAGC TGGCGCACCA CTGGTTCTCC GCGCGGATCT TCCCCCAGGC GCTCGCCGCC
GCAGTGCGTG CGGGCGAGCT GACCATCGGT ACGCGCGCGT TCCACGAAGC AGAGCGGCAG
TACAAGCGGG CGTTGGACCT GTGGAGCCGG GTCTCGGATC CCGAAGGCGA GGCCGGAACG
ACCCGCCTGC GCGTTCTGGA GTCCGCCGCG GACGCCGCCC GGTGGGCCGG ACACGGCTGG
CGCGCGGTGG AGTTCATCGA GGAGGCCATC GCGCTGATCG ACCCGGTTCG GGACGCCAGA
AGACTCGGTG AGTTGTATGA ACGTCTGGGC AGCTACTTCT GGGAGGCCGG GGCGAGCAAA
CAGACCCACG AGGCTTACGC CCGGGCCGAA CATCTGCTGG CCGGTTCCGC GCCCGGGGAA
GCCGTCTACG CCAGGGCTCT GACCGGACTG GCCATGGCCG AGGTCCGGGC CTACTCCTAC
GACGAGGGAC TGAGGCGGGC CCGCCATGCC GCGAAGGTCG CCGAGACGGC CGGCGACCTG
GCCGCCGAGG GTCGCGCGCT CAACGCGGCA GGCTTGGCGC TCACCAGGCT CGGACAGACT
GAGGAAGGCA TATCCCTGCT TCGGCGTGCT CTGGACAGCG CCAAGCGCAC CGAGCAGTTG
GAGGATCTCT TCCGGGTCTA CGGAAACATC TGCGTTGCCC TGGAAGGCAT CGGTGACGCG
GCCGGCACCC TCCGGATCGC CGAAGCCGGG TTGAAGGACG CGGACCGGTT CGGCCTGCAG
GGAACCCGCC CGGCCCGGGT GGTCGCGAAC GCCGCCGCCG TCGCCCTCAC TTTGCTGGGG
CGGTGGGACG AGGCCACGGC GCTGTTGGAG GACACCCTGC GGGACCGGCC CCCGGTCGGG
GAGAGCGTCT ACGAGCGGCT GACCCTGGCC GAGGTCGACG TGGCGCGCGG CCGGTTCGCC
GAGGCCCGGC GGCTGATCGA GGACGTCCGC GGCAAACGGG GCGACGACCC GCGGCTGGCG
GCGGCGCTGC AGGTGTGCCA GGCCGAGGCC GACTATTGGC AGGGACGGCC GGACGACGCT
CTGGCCTCGG TCACACGCGG GCTGACCACG TTCGGCGTGG CCGAGGACGT CACGGATGTC
CTGCGGCTCC ACGCCGTGGG TCTGCGTGCG GCGGCCGACA TCGTCACGAT CGGGGCCAGC
GAGTTCAGTG CGGACGGAGA CGACCCGGCG GTGACCGCAG CAGCCGAGGC ACTGCTGTCG
GGTTGGACCG CCGAAGTCTT GCCGCGCCTG GCCGCACGCG TCACGACTCC CGAGACCAGG
GTTCTGTGCC GGCTGTGCGA CGCCGAGCGC GACCGGGCGG CGGGTCGGGA CACGGCCGCG
GTCTGGGCTG GCGTCGCCGA GGACTGGGAC GGCCTGGGTC GGCCCTACCC CGCGGCATAC
GCGCATTGGC GTCAGGCGGC GGCCGCACTG GCGGCGGGCG ACCTGGCGGA GGCGCTCCGG
GTGGCCGGTG CCGCCGCGGA CGCCGCCGCG ACGTTGACCG CGGCTCCGCT GGGCGTCGTC
GTTCGGCGCT GGCTCGGTGT CGCCGACGGC CCCGTCACCA AGAAGAAGGC TGCCCGCCCC
GGCGTGTCGG GAATCCCGGC GCCCTTCGAC GCGCTGACTG CCCGGGAGCG CGAGATCTGC
GCCGGCATCG TGCGCGGCAG CAAGAACCGC GAGATAGCCG TCGACCTCTT CCTGGCTGAG
GGTACCGTCG CGGCACATGT GAGCAAGATC CTCGGCAAGC TCGAACTGCG CAGCCGCGTC
GAGTTGGCGA CTCTGGCGCT CAGGGTGGGT TTCCCGGTCC AGAATGGTGG CGTCTCCGCT
GGTGAGGACC GTTCCTGA
 
Protein sequence
MEAGKLVGRE RELGELCALV DAASAQRPRI VLVSGEPGVG KSRVIEEFAG RAREKGAIVL 
RGACLDLGRG DIPYLPLVEA LRLKARQQSG AHTRAAAGPV WDELSGLING FTGAGGGGRT
ERFGVQPVYA ALLRMLDQLG AAAPVVLVFE DIHWADQSTL DLVSFLSRAM SDERVLLVCS
HRAGMPAGHP TRILLAEPDF GRRVRRVAVP PFTEPELLRF LESLGGDVDA DMARACFERS
EGNAFFAQQL YESGALTDQA AGHLPVSVKE LMLARLGTLS TDADRVMRVV ATAARRVSGD
LIAAVCGLDD ESLDQALREC LDADTLAADP MDDVYAVRHA LMREAIYERM SPRERIRLHT
AMAEALTADP TLSLADGRSA AVELAHHWFS ARIFPQALAA AVRAGELTIG TRAFHEAERQ
YKRALDLWSR VSDPEGEAGT TRLRVLESAA DAARWAGHGW RAVEFIEEAI ALIDPVRDAR
RLGELYERLG SYFWEAGASK QTHEAYARAE HLLAGSAPGE AVYARALTGL AMAEVRAYSY
DEGLRRARHA AKVAETAGDL AAEGRALNAA GLALTRLGQT EEGISLLRRA LDSAKRTEQL
EDLFRVYGNI CVALEGIGDA AGTLRIAEAG LKDADRFGLQ GTRPARVVAN AAAVALTLLG
RWDEATALLE DTLRDRPPVG ESVYERLTLA EVDVARGRFA EARRLIEDVR GKRGDDPRLA
AALQVCQAEA DYWQGRPDDA LASVTRGLTT FGVAEDVTDV LRLHAVGLRA AADIVTIGAS
EFSADGDDPA VTAAAEALLS GWTAEVLPRL AARVTTPETR VLCRLCDAER DRAAGRDTAA
VWAGVAEDWD GLGRPYPAAY AHWRQAAAAL AAGDLAEALR VAGAAADAAA TLTAAPLGVV
VRRWLGVADG PVTKKKAARP GVSGIPAPFD ALTAREREIC AGIVRGSKNR EIAVDLFLAE
GTVAAHVSKI LGKLELRSRV ELATLALRVG FPVQNGGVSA GEDRS