Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_6954 |
Symbol | |
ID | 8338320 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 8032295 |
End bp | 8035312 |
Gene Length | 3018 bp |
Protein Length | 1005 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644960035 |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_003117626 |
Protein GI | 256396062 |
COG category | [R] General function prediction only |
COG ID | [COG3899] Predicted ATPase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGGCGG GAAAGCTCGT CGGGCGAGAG CGGGAACTCG GCGAATTGTG CGCGCTCGTG GACGCCGCGT CGGCCCAAAG GCCGCGCATC GTCCTGGTGT CCGGGGAACC GGGGGTCGGC AAGAGCCGCG TCATCGAGGA GTTCGCGGGC CGGGCACGCG AGAAGGGCGC CATCGTGCTG CGCGGAGCGT GTCTGGATCT GGGCCGCGGC GACATCCCCT ACCTCCCTCT GGTCGAGGCA TTGCGGCTGA AGGCGAGGCA GCAGAGCGGG GCGCACACGC GCGCGGCGGC CGGCCCGGTC TGGGACGAGT TGTCCGGCTT GATCAACGGC TTCACCGGCG CCGGGGGTGG CGGCCGCACC GAAAGGTTCG GGGTGCAGCC CGTCTACGCC GCGCTGCTTC GCATGCTGGA CCAGCTGGGC GCCGCGGCGC CCGTGGTGCT CGTGTTCGAG GACATCCACT GGGCCGACCA GTCCACCCTC GACTTGGTCT CCTTCCTGTC CCGGGCCATG TCGGACGAGC GTGTCCTGCT GGTGTGCAGC CACCGCGCGG GCATGCCGGC CGGCCATCCG ACGCGGATCC TGCTCGCCGA GCCGGACTTC GGCCGCCGGG TCCGCCGCGT GGCCGTGCCG CCCTTCACAG AACCCGAGCT CCTCCGCTTC CTGGAGTCCC TGGGCGGCGA CGTCGACGCG GACATGGCGC GCGCGTGCTT CGAGCGGTCC GAGGGCAACG CGTTCTTCGC CCAGCAGCTC TACGAGTCCG GCGCGCTCAC CGATCAGGCG GCCGGACACC TTCCCGTCTC CGTCAAGGAG CTGATGCTGG CGCGCCTCGG AACGCTGAGC ACTGACGCCG ACCGCGTCAT GCGGGTCGTC GCGACCGCCG CGCGCCGGGT GAGCGGCGAT CTGATCGCCG CGGTGTGCGG GCTCGACGAC GAGTCGCTGG ACCAGGCCCT GCGCGAGTGC CTGGACGCAG ACACGCTCGC CGCCGATCCG ATGGACGACG TCTACGCCGT GCGGCACGCC CTGATGCGGG AGGCCATCTA CGAGCGGATG TCTCCCCGAG AACGGATACG GCTGCACACT GCTATGGCCG AGGCGCTGAC CGCCGACCCC ACCCTTTCCC TGGCGGACGG CCGGAGCGCC GCGGTCGAGC TGGCGCACCA CTGGTTCTCC GCGCGGATCT TCCCCCAGGC GCTCGCCGCC GCAGTGCGTG CGGGCGAGCT GACCATCGGT ACGCGCGCGT TCCACGAAGC AGAGCGGCAG TACAAGCGGG CGTTGGACCT GTGGAGCCGG GTCTCGGATC CCGAAGGCGA GGCCGGAACG ACCCGCCTGC GCGTTCTGGA GTCCGCCGCG GACGCCGCCC GGTGGGCCGG ACACGGCTGG CGCGCGGTGG AGTTCATCGA GGAGGCCATC GCGCTGATCG ACCCGGTTCG GGACGCCAGA AGACTCGGTG AGTTGTATGA ACGTCTGGGC AGCTACTTCT GGGAGGCCGG GGCGAGCAAA CAGACCCACG AGGCTTACGC CCGGGCCGAA CATCTGCTGG CCGGTTCCGC GCCCGGGGAA GCCGTCTACG CCAGGGCTCT GACCGGACTG GCCATGGCCG AGGTCCGGGC CTACTCCTAC GACGAGGGAC TGAGGCGGGC CCGCCATGCC GCGAAGGTCG CCGAGACGGC CGGCGACCTG GCCGCCGAGG GTCGCGCGCT CAACGCGGCA GGCTTGGCGC TCACCAGGCT CGGACAGACT GAGGAAGGCA TATCCCTGCT TCGGCGTGCT CTGGACAGCG CCAAGCGCAC CGAGCAGTTG GAGGATCTCT TCCGGGTCTA CGGAAACATC TGCGTTGCCC TGGAAGGCAT CGGTGACGCG GCCGGCACCC TCCGGATCGC CGAAGCCGGG TTGAAGGACG CGGACCGGTT CGGCCTGCAG GGAACCCGCC CGGCCCGGGT GGTCGCGAAC GCCGCCGCCG TCGCCCTCAC TTTGCTGGGG CGGTGGGACG AGGCCACGGC GCTGTTGGAG GACACCCTGC GGGACCGGCC CCCGGTCGGG GAGAGCGTCT ACGAGCGGCT GACCCTGGCC GAGGTCGACG TGGCGCGCGG CCGGTTCGCC GAGGCCCGGC GGCTGATCGA GGACGTCCGC GGCAAACGGG GCGACGACCC GCGGCTGGCG GCGGCGCTGC AGGTGTGCCA GGCCGAGGCC GACTATTGGC AGGGACGGCC GGACGACGCT CTGGCCTCGG TCACACGCGG GCTGACCACG TTCGGCGTGG CCGAGGACGT CACGGATGTC CTGCGGCTCC ACGCCGTGGG TCTGCGTGCG GCGGCCGACA TCGTCACGAT CGGGGCCAGC GAGTTCAGTG CGGACGGAGA CGACCCGGCG GTGACCGCAG CAGCCGAGGC ACTGCTGTCG GGTTGGACCG CCGAAGTCTT GCCGCGCCTG GCCGCACGCG TCACGACTCC CGAGACCAGG GTTCTGTGCC GGCTGTGCGA CGCCGAGCGC GACCGGGCGG CGGGTCGGGA CACGGCCGCG GTCTGGGCTG GCGTCGCCGA GGACTGGGAC GGCCTGGGTC GGCCCTACCC CGCGGCATAC GCGCATTGGC GTCAGGCGGC GGCCGCACTG GCGGCGGGCG ACCTGGCGGA GGCGCTCCGG GTGGCCGGTG CCGCCGCGGA CGCCGCCGCG ACGTTGACCG CGGCTCCGCT GGGCGTCGTC GTTCGGCGCT GGCTCGGTGT CGCCGACGGC CCCGTCACCA AGAAGAAGGC TGCCCGCCCC GGCGTGTCGG GAATCCCGGC GCCCTTCGAC GCGCTGACTG CCCGGGAGCG CGAGATCTGC GCCGGCATCG TGCGCGGCAG CAAGAACCGC GAGATAGCCG TCGACCTCTT CCTGGCTGAG GGTACCGTCG CGGCACATGT GAGCAAGATC CTCGGCAAGC TCGAACTGCG CAGCCGCGTC GAGTTGGCGA CTCTGGCGCT CAGGGTGGGT TTCCCGGTCC AGAATGGTGG CGTCTCCGCT GGTGAGGACC GTTCCTGA
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Protein sequence | MEAGKLVGRE RELGELCALV DAASAQRPRI VLVSGEPGVG KSRVIEEFAG RAREKGAIVL RGACLDLGRG DIPYLPLVEA LRLKARQQSG AHTRAAAGPV WDELSGLING FTGAGGGGRT ERFGVQPVYA ALLRMLDQLG AAAPVVLVFE DIHWADQSTL DLVSFLSRAM SDERVLLVCS HRAGMPAGHP TRILLAEPDF GRRVRRVAVP PFTEPELLRF LESLGGDVDA DMARACFERS EGNAFFAQQL YESGALTDQA AGHLPVSVKE LMLARLGTLS TDADRVMRVV ATAARRVSGD LIAAVCGLDD ESLDQALREC LDADTLAADP MDDVYAVRHA LMREAIYERM SPRERIRLHT AMAEALTADP TLSLADGRSA AVELAHHWFS ARIFPQALAA AVRAGELTIG TRAFHEAERQ YKRALDLWSR VSDPEGEAGT TRLRVLESAA DAARWAGHGW RAVEFIEEAI ALIDPVRDAR RLGELYERLG SYFWEAGASK QTHEAYARAE HLLAGSAPGE AVYARALTGL AMAEVRAYSY DEGLRRARHA AKVAETAGDL AAEGRALNAA GLALTRLGQT EEGISLLRRA LDSAKRTEQL EDLFRVYGNI CVALEGIGDA AGTLRIAEAG LKDADRFGLQ GTRPARVVAN AAAVALTLLG RWDEATALLE DTLRDRPPVG ESVYERLTLA EVDVARGRFA EARRLIEDVR GKRGDDPRLA AALQVCQAEA DYWQGRPDDA LASVTRGLTT FGVAEDVTDV LRLHAVGLRA AADIVTIGAS EFSADGDDPA VTAAAEALLS GWTAEVLPRL AARVTTPETR VLCRLCDAER DRAAGRDTAA VWAGVAEDWD GLGRPYPAAY AHWRQAAAAL AAGDLAEALR VAGAAADAAA TLTAAPLGVV VRRWLGVADG PVTKKKAARP GVSGIPAPFD ALTAREREIC AGIVRGSKNR EIAVDLFLAE GTVAAHVSKI LGKLELRSRV ELATLALRVG FPVQNGGVSA GEDRS
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