| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6938 |
|---|
| Symbol | |
|---|
| ID | 8338304 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 8010583 |
|---|
| End bp | 8012115 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644960021 |
|---|
| Product | sodium/hydrogen exchanger |
|---|
| Protein accession | YP_003117612 |
|---|
| Protein GI | 256396048 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0025] NhaP-type Na+/H+ and K+/H+ antiporters |
|---|
| TIGRFAM ID | [TIGR00831] Na+/H+ antiporter, bacterial form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00616672 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0141453 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGCACG CCGTGGGGAT CGTGGTGATG CTGGTGGTGC TCGGCACCGC CGTGGCCACG
TTCGCGGGGC GGTGGGGGAT TCCGGCGCCG TCGCTGCTGG TGCTCGCCGG GATCGTCGTG
GCGCTGGTTC CCGGGGTGCC GGCGATCCAT GTGGCCCCGG ATGTGATCGC GCTGGTGGTG
TTGCCGCCGC TGTTGTACGC CTCGGCCGAG GAGATCTCGG CGCGGGATCT GCGCCGGGTG
TGGGTGCCGG TGACCGTGCT GGCGCTGGGT CTGGTGCTGG CGACGGCCGC GGTGATCGCT
TCGCTGGCCC TGGCGCTGAC GGCGCTGTCC GGGGCGATGG CGTTCGTGCT GGGAGCGGTG
CTGGCCTCCA CCGATCCGGT GGCGGTCACC GCACTGGGCC GTCGGCTGTC GCTGCCGGCG
CGGATCCAGG TGCTGGTGCA GTCCGAGAGC CTGTTCAACG ACGCTACCTC GCTGGTGCTG
TTCAAGGTGG CGGTCGCGGC GGTCGTGGCC GGCGGGTCGG TGAGCCTCGC CGGGGCGGCG
GGACGCTTCC TGCTCCTGGC CGGTGGCGGT ATCGCGGTGG GTCTGGCGCT GGCCGCGTCG
GTGGCGCTGG TGCGTACGCG CACCACCGAT CCGGTGCTGG ACACGGTGAT CGCCCTGGTC
GCCCCCTACG CCGCGTACCT GCTGGCCGAG TCGGTCGACG TGTCGGGGGT GACGGCGGTG
GTGGTGGCCG GGGTCGCGGC CGGAAGCCTC GGACACCGGG TCTCCGATGC CCGCACCCGG
CTGCATGTGC AGACCGTGTA CGCCGTGGTG GTCTTCGGGC TGGAATCCGT GGTGTTCGCG
CTGATCGGCC TGGAGTTGCC GACACTGGTA CGGGATCTGG GACCGGGGAA CTCCTGGTGG
CCGGGGCAGG CGGCAGTGCT GGCAGCGGCA CTGATCGGAA TCAGGATGCT GTGGGTATGG
CCGACGACGG CCTGGGCCGG CCCGACCCGC CGGTACCCGA CCTGGCCGCT GGTCCGCGTG
GTGACCTGGT CCGGAACCCG GGGCGTGATG CCGCTGGCCG CAGCGCTGTC GATCCCCCTG
GTCGCCGCCG ACGGCACACC GCTGCCAGGC CGGGGACTGG TGCTCGTACT GACCACGGCG
GTGGTAGCGG CCACGCTGAC CGTGCAGGGC CTGAGTCTGG CCGGCATGGT GAAAACCTCG
GGCCTGGCCG TCGCCACAGA GCATGCCGCA GCCAAGGAGC AGGCAGCACT GGCAGCAATG
AACGAGGCCG CAGTGGCATA TCTAGACGAG CTCGCAGCAG TCGGCGCAGT GAACGCAGTG
GCGGTCGAAC GACTCCGGCA GCGCTACGCC GAGCGCCTGG ACCCCCAGAC CGACGCCGGA
CTCCTGGACG ACTTAGCTGC GCTGCGACGG GACGTCCTCA GCGTGCAATC CGAAGAGCTG
CGCCGACTGT CCGCGCAAGA GCAGATCTCT GACGGCATGC GCCGCCGCTT GCAAGCCGAC
CTCGACCGCC GCGAAGCAGG ACTGGACGCC TGA
|
|---|
| Protein sequence | MVHAVGIVVM LVVLGTAVAT FAGRWGIPAP SLLVLAGIVV ALVPGVPAIH VAPDVIALVV
LPPLLYASAE EISARDLRRV WVPVTVLALG LVLATAAVIA SLALALTALS GAMAFVLGAV
LASTDPVAVT ALGRRLSLPA RIQVLVQSES LFNDATSLVL FKVAVAAVVA GGSVSLAGAA
GRFLLLAGGG IAVGLALAAS VALVRTRTTD PVLDTVIALV APYAAYLLAE SVDVSGVTAV
VVAGVAAGSL GHRVSDARTR LHVQTVYAVV VFGLESVVFA LIGLELPTLV RDLGPGNSWW
PGQAAVLAAA LIGIRMLWVW PTTAWAGPTR RYPTWPLVRV VTWSGTRGVM PLAAALSIPL
VAADGTPLPG RGLVLVLTTA VVAATLTVQG LSLAGMVKTS GLAVATEHAA AKEQAALAAM
NEAAVAYLDE LAAVGAVNAV AVERLRQRYA ERLDPQTDAG LLDDLAALRR DVLSVQSEEL
RRLSAQEQIS DGMRRRLQAD LDRREAGLDA
|
|---|
| |