| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6918 |
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| Symbol | |
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| ID | 8338284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 7989654 |
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| End bp | 7993658 |
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| Gene Length | 4005 bp |
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| Protein Length | 1334 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644960002 |
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| Product | transcriptional regulator, XRE family |
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| Protein accession | YP_003117593 |
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| Protein GI | 256396029 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2319] FOG: WD40 repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00260237 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000100378 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCGACG GAACTGCGAT TTCCGGTAAG AGGGAAATCG GGCCGGAGAG TATTTCCACG
CGAGCCGAGT TCGGTCGGGC GCTGACGGAG CTGCGTGAGG CGGCGGGCCT GACCATCCGT
GACGCCGCCA AGGGATTGGG TCTGCCGTCC AGTACGATCG GCGGCTACCT CACGGGCCGC
CACCTGCCGC CGGTGCGGTT CCCGGATCTC CTGCCCGATT TTCTCCGGAT GTGCGGTGTC
TCGGACCCGT CGGAGATCGA GGAGTGGGTT CGGGCGCTCT GGCGAATACG TCGGGCCAGT
GGGCAACGGG CGACGGCTGG CTCACAGTCC CCCTATCGCG GACTGGCTGG CTTCCAACCC
GAGCACGCCG CCTGGTTCTA CGGCCGCGAG TCGCTGACCG ACCTGCTGAT CGGCCGGATC
CTGGCCGACG AGCCGCCCGA CGGCCCGGTG CTCGTCGTCG GCGCGTCCGG CTCGGGCAAG
TCCTCGTTGA TCCGGGCCGG GCTGATCCCG GCGCTGACCG GAGGCGCGTT TTCCGACGAC
GAGCATGACG CCTGGAAGGT GGTTTTGCTC ACCCCTGGGG ACCGGCCGTT GACCGCGCTG
GCTCAGAGCC TCACGAACTT GTCGGCGACG AGTGGTGCCG ATACCGTCGC GGCTCTACGT
ACCGATCCTG GGACGTGTCG AGGCCTCGCC CGTGCTGTCA CGGACGAGCT GGACGGCCCC
GGACTGGTCA TCGTGGTCGA CCAGTTCGAG GAGGTCTTCA CCTCGTGCTC CGACGAGAGC
GAGCGTGAGG CGTTCATCGC CGCGCTTTGT TCGGCGGCAC GGAACCATTC TGTCGACGAC
GAGGGCGCGA TACCGGCGGC GGCCGGCAGA GTCCAGGTCG TGGTGGGGTT GCGGGCTGAC
TTCTATCCGC AGGTTCTTCG CCACTCCCAG CTGGCCACGG CTCTGCAAGA AGCGCAAATC
GTGGTTGCTC CGATGTCCCG CGAGGACCTG CGCCGAGCGA TCATCGAGCC GGCCAGATCG
GCCGGTGTGG CGTTCGAACC GGGTCTGGTC GAACTCATCC TCACGGAGAT TGCCCCGCCA
GGTGCCGATC CGTCCGTGAT CGCGCACGAC TCCGGTGCGC TGCCGTTGTT GGGTCACGCG
TTACTGGCGA CTTGGGAACG CCGTCGGCAC GGACTCCTTA CCGCCGATGA GTATCGTGCG
ACCGGCGGCA TCCATGGGGC CGTCGCGCGA AGCGCCGAGG ACGTCTTCAC ACGTCTTAGC
CCGGCGCAGC AGTCGCTGGC TCGGCAACTG TTTCTGCGCC TCGTCCACGT CGCCGATCAG
GTAGCTGATA CGCGCCGTCG CGTCGCACGG CACGACCTGC TGCCCGGCTC CCCGGACACC
GAGATCGACG CCGAGGGACT CCAACCGGTC CTCGACGCGT TCGTCGAGAA CCGGCTGATC
ACCTCTTCGC GGGACACGGT TGAGATCGCG CACGAGGCAC TGCTGGTTGC CTGGCCGCGG
CTGCGGGCGT GGATCGACGC CGACCGGGCC GGCCTGCGGG TTCACCGGCA ACTCGGAGAC
GCGGCGGCGG CCTGGCGTGA CGCCGATCGG GACCCGCACA TGCTCTACCG CGGCGTAGCC
CTCGCCGCCG CGAAGGAGTG GGCTGACGAC CTGACGCACC GTCTGGACCT CTATCCGTTG
GAACTCGACT TCCTCGACAG GGCTGTTCGG GCCGAACAGG CCGAACGGCA GGCTCGTCGT
CGCAGTACCC TGCGGCTGCG CAGGCTGGTC GCGACTTTGA CAGTGTTGGT CGCGGTAGCC
GGGCTGCTCG CCGGTTATGC CTTCCAGCAG AGGAACGTCG CCGCGAAGCA ACAGGCGGAG
GCGACCAGGC AACGCGACTC CGCCATCTCT CGCCAGGTGG CCATCGAGGC GAGCAAGGTG
CGGAGCACCG ACGTCACGCT CGCCGAACAG CTGGCCATCG CCGCCTTCCG GATATCGCCG
ACGCCCGACG CCCGCGGCGC CCTGCTCGAC TCCTGGTCGA CGCCGGCCGC GACACGCGTC
TTCACCAAGG CCAGCGTCGT GCAATCGGTC GCGGTCACCA GCGACGCGCG TACGATGGCC
ACCTCCGGCG CCGGCGGCCT GGTGCAGCTG TGGGGACTGA CTGATCCGGG CCGTCCGAAA
CCGCTCGTTG ATCTGCCGAC TGGCCACACG TATACGATGT TCTCGCTCGC GTTCAGTCCG
GACGGTCGCA CCCTGGCCGT GGGCGGCGCG CAAGGCGTGA TCCGGGTGTG GAACACAACG
GATCCGGCCA GGCCCGTCGC CCTGCCTCCG CCACTGACCG GCACGACCGC CACCGTCTAC
TCCCTCGCGT TCAGCCCCGA CGGCCGGCTG CTGGTCGCCG CTGGCTCCGA CGGCTCCGTC
CGATTGTGGA ACATGGCCGA CCCGAGCCGT CCAGAGGCGA TCGGGCCGCC GCTCGTTAGC
TTCGGCAAGT CCGCGCAGGC GGTAGCCTTC AGCCCGAACG GCCGCGTCCT GGCCGCCGGC
AGCAGGGACG GCACCGTACG CCTGTGGCAG GTGACCGGAC CGACCTCACC AACGGAGCTC
GGCGGCCCGC TGACCGACAC GGCTCACGTC GTGTACTCGC TCGCCTTCGG TCCGGACGGT
CAGACCTTGG CCGTTGGCAG TTCCGACGGA GTCGTGCAGT TGTGGAACCT CAACGATCCG
ACGCGGCCCA CAACGTCAGG CCAGCCGCTG ACCGGACCTG GGAGCTGGGT CAACTCCCTG
GTCTTCAGCC CGGACGGGAC GCGGCTCGCT GCCGCCGACT CCGACGACCA GGTTTGGCTA
TGGGACGCGG GAACCCGGCA ACTCGTCACC AAACTGCCGC ATCCCGCCGC GGTCACTTCA
GTGTTCTACC TTCGGGACAA TTCGACGCTG GCGACCGGGG ACATCGACGG GATCGCCCGC
CTGTGGCGAC TGCCCGGACC CACCATCGAG CCGATCCCGG GCACGATCTA CTCGACCGTG
ATGGGCCCGC ACCATACTCT CGCCGTCGGA TCCACGGCCA CGGCGTCCCT ATGGGACCTG
TCCACGCCCC GGACCCCGAA GCTCCGCGGG CCGGCGATCA CCTCGCCCAC CGGGAAAGCC
GCCTTCTCCG GCACCGTGCA GACCAGCCCT GACGGGAACA CCATTGCCAT TGGCAGCAAC
GACGGCACGG TCCGGCTGTG GGACATCACC GATCCGCGAC ATCCCATTCT CCTACCAGCT
GTTCTCAACG GCCTTAGCAC TCCGGTGGAG ACCATCGCCT TCAGCCCCGA CGGACACATC
ATCACCGTCG GCGCCGATGA GGCGACCATC CACCTCTGGA ACATCACCGA TCTGCGAAAT
CCCATAGCTC TGCCATCCAT CACCGGCCCG ACCAACTACG TCTTCTCCCT CGCGTTCAGC
CCCAACGGCC GGGTGCTGGC CGCCGGCAGC GCCGACTACG ACGTCCGTCT GTGGGACGTC
AGCGACCCGG CCCGGGCCGT CTCCCTGGGC CCGGCATTGG CCACGCACAC GAACTACGTT
TATGCCGTCG TCTTCAGTCC GAACGGCCGC GTGCTCGCCG CGAGCAGCGC GGATGAGACC
GTCCAACTGT GGGACGTCAC CGACCCGGCC AAGCCGGTCG CACTCGGCCC CGCTCTGACC
GGTCCCAACA GCGGAACCTA CGCGGCCGCC TTCGGCTCCG GCGGCGGCCT GTTGGCCGCG
TCCACGGGTG AGGGCACCGT ATGGTTGTGG GACGTCACCG ATCCCCGCCG ACCCCGCTTC
CTGGAGACCC TCGCCGAGCT CAACGGCCCG ATCTTCGGAG CCGACCTGGA TCCCGAAAGC
ACGATCCTCG TCGCCGGCAG CAGGACGAAG AACACCATCA AAATCTGGAA CACCGATGTA
AATCAGACAA TTAATGATAT CTGCGCCACG GTGGGAGACC CCATCAGCAT CGCCGAGTGG
AACCGCTACG TCCCCGACAC GCCATACGCT CCGCCTTGCC GGTGA
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| Protein sequence | MSDGTAISGK REIGPESIST RAEFGRALTE LREAAGLTIR DAAKGLGLPS STIGGYLTGR
HLPPVRFPDL LPDFLRMCGV SDPSEIEEWV RALWRIRRAS GQRATAGSQS PYRGLAGFQP
EHAAWFYGRE SLTDLLIGRI LADEPPDGPV LVVGASGSGK SSLIRAGLIP ALTGGAFSDD
EHDAWKVVLL TPGDRPLTAL AQSLTNLSAT SGADTVAALR TDPGTCRGLA RAVTDELDGP
GLVIVVDQFE EVFTSCSDES EREAFIAALC SAARNHSVDD EGAIPAAAGR VQVVVGLRAD
FYPQVLRHSQ LATALQEAQI VVAPMSREDL RRAIIEPARS AGVAFEPGLV ELILTEIAPP
GADPSVIAHD SGALPLLGHA LLATWERRRH GLLTADEYRA TGGIHGAVAR SAEDVFTRLS
PAQQSLARQL FLRLVHVADQ VADTRRRVAR HDLLPGSPDT EIDAEGLQPV LDAFVENRLI
TSSRDTVEIA HEALLVAWPR LRAWIDADRA GLRVHRQLGD AAAAWRDADR DPHMLYRGVA
LAAAKEWADD LTHRLDLYPL ELDFLDRAVR AEQAERQARR RSTLRLRRLV ATLTVLVAVA
GLLAGYAFQQ RNVAAKQQAE ATRQRDSAIS RQVAIEASKV RSTDVTLAEQ LAIAAFRISP
TPDARGALLD SWSTPAATRV FTKASVVQSV AVTSDARTMA TSGAGGLVQL WGLTDPGRPK
PLVDLPTGHT YTMFSLAFSP DGRTLAVGGA QGVIRVWNTT DPARPVALPP PLTGTTATVY
SLAFSPDGRL LVAAGSDGSV RLWNMADPSR PEAIGPPLVS FGKSAQAVAF SPNGRVLAAG
SRDGTVRLWQ VTGPTSPTEL GGPLTDTAHV VYSLAFGPDG QTLAVGSSDG VVQLWNLNDP
TRPTTSGQPL TGPGSWVNSL VFSPDGTRLA AADSDDQVWL WDAGTRQLVT KLPHPAAVTS
VFYLRDNSTL ATGDIDGIAR LWRLPGPTIE PIPGTIYSTV MGPHHTLAVG STATASLWDL
STPRTPKLRG PAITSPTGKA AFSGTVQTSP DGNTIAIGSN DGTVRLWDIT DPRHPILLPA
VLNGLSTPVE TIAFSPDGHI ITVGADEATI HLWNITDLRN PIALPSITGP TNYVFSLAFS
PNGRVLAAGS ADYDVRLWDV SDPARAVSLG PALATHTNYV YAVVFSPNGR VLAASSADET
VQLWDVTDPA KPVALGPALT GPNSGTYAAA FGSGGGLLAA STGEGTVWLW DVTDPRRPRF
LETLAELNGP IFGADLDPES TILVAGSRTK NTIKIWNTDV NQTINDICAT VGDPISIAEW
NRYVPDTPYA PPCR
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