Gene Caci_6907 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6907 
Symbol 
ID8338273 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp7978271 
End bp7979680 
Gene Length1410 bp 
Protein Length469 aa 
Translation table11 
GC content62% 
IMG OID644959994 
ProductRicin B lectin 
Protein accessionYP_003117585 
Protein GI256396021 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00437458 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000226989 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACGATCG CGCTAGCCTT CGCCCTGTTG ATCGGGTCGG TTGGCCTGAC CTCCATGGCC 
GCTTCCCCCG CCTACGCCAC CACGTCGCAG TTCCATGGGG TGAACTGGGC CGATCCGGAC
GACAACTTCA TCACCGGCCC GAACATCCCA GTCGGGCTGT CGGCGTCGGA CAACTACGCG
ACCGTGTACG CGAAGTCCAC GGCGATCCTC AAGGGCTTCC AGGCCATCGG GGCCAACACG
GTGCGCATGG GGATCAACGC CGCGACGACC TCCGGATCAT GGTGGAACAG CTACACGGCG
GCCCTGGACG CCGCAAGCGA CTTGGGTATG AACGTCGTCA TCGCTCCGTG GCTCCAGAAC
GGCAAGGTCA GCGACACGGC GTCGTTCTAC GCCATGTGGA ACACGGTCAT CAACAAGTAC
GGGTCGAAGA GCAACTTCTA CTTCGACATC ATGAACGAGC CCTACGCGTA CAGCGCCACC
GACCTGACCA ACTTCGAGGC TGACTGGCTT GCGCACTACC CCAATCTGCC GCGGGGCCGC
GTGATAGTCC CGGGCACTTG GGACGACGAG TCCCTGTGTG CTGAAGGAGC TGATTCCCGA
CTCGCGGGGA CCTTGCTGTC CATCCACATC TACGGCATGT TCGGGAACTC GCACACGACC
GAGGCTGCTT GGGTCACGAA CTTCGAGAAC AACATGTGCG GCTACGCGAG TCGCGCTGTG
CTGACGGAGT TCGGAGTGGC GATGAACACC GGCGCCTATT ACGACGGTGC CAGAGACGGC
AACAATGATG TCTCCTACCT GTACGGGATC ACCGATACGG TCCGCAAGCT GGGCATAGGA
TCCATCCTCT GGACGGGCGT GAAGCAGGCC GACCAGAGCG TGGGTCCAGG GCCGTGCGAG
AACGCATCCT GCGCGATCAC CTCGGTCAGC GGGAGCGGAA CGAACCTCTC GCTGAGCGTG
ACCAACCGGT CTGGTCTCGA CAGGATCCAG TACGGATGGG GAGGCGGAAA CTCCGGCGCC
GTCAGTACCG CGGTGCTTCG AGCAACCGCA TCCAACCGGT GCCTGGATGT GCCGAACGCC
TCCACCACCA ACGGCACTCA AACTGAGATC TGGGACTGCA ACGGCGGCAG CAACCAGTCC
TGGACGTTGA ATTCTGCCAA GTCCCTTGTC GTCTACGGCA ACAAGTGCCT CGATGCCGCC
AACGCTGGTA CTGCGCCCGG CACACCGGTC ATCATCTGGG ACTGCAACGG CGGCACGAAC
CAACAGTGGA CGATGAATAG CAACGGCACT GTCACCGCTG TTCAGTCCGG TCTCTGCCTC
GACGTCACCA AGGGCGGAAC CTCTAACGGC ACAGCGATCG AGCTGTGGAC CTGCAACGGC
GGCAGCAATC AGAAGTGGGC GCGCCAGTAA
 
Protein sequence
MTIALAFALL IGSVGLTSMA ASPAYATTSQ FHGVNWADPD DNFITGPNIP VGLSASDNYA 
TVYAKSTAIL KGFQAIGANT VRMGINAATT SGSWWNSYTA ALDAASDLGM NVVIAPWLQN
GKVSDTASFY AMWNTVINKY GSKSNFYFDI MNEPYAYSAT DLTNFEADWL AHYPNLPRGR
VIVPGTWDDE SLCAEGADSR LAGTLLSIHI YGMFGNSHTT EAAWVTNFEN NMCGYASRAV
LTEFGVAMNT GAYYDGARDG NNDVSYLYGI TDTVRKLGIG SILWTGVKQA DQSVGPGPCE
NASCAITSVS GSGTNLSLSV TNRSGLDRIQ YGWGGGNSGA VSTAVLRATA SNRCLDVPNA
STTNGTQTEI WDCNGGSNQS WTLNSAKSLV VYGNKCLDAA NAGTAPGTPV IIWDCNGGTN
QQWTMNSNGT VTAVQSGLCL DVTKGGTSNG TAIELWTCNG GSNQKWARQ