| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6887 |
|---|
| Symbol | |
|---|
| ID | 8338253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 7956804 |
|---|
| End bp | 7959611 |
|---|
| Gene Length | 2808 bp |
|---|
| Protein Length | 935 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644959975 |
|---|
| Product | transcriptional regulator, SARP family |
|---|
| Protein accession | YP_003117566 |
|---|
| Protein GI | 256396002 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3629] DNA-binding transcriptional activator of the SARP family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.691511 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.899507 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACCTGA TCGCACGCCT TTCCAAGGCG GCTTTCTCTC TGGCCCTTAC CGCCGGGCTG
TCCTGTGGCG TTCCGTGGTT GCTGCTGACC TATATCGGAA GTCCTGTTCC GAAGCAGTTC
CCGGGCTTGC ATGAGATCGT GCCTGCTCTG TCGGCACGGT TCGACATCCA CGTCTTCATC
ACGATCATCG TCTATCTGCT GTGGGCTTGC TGGGCTGTGC TCGTTGTGCA GCTGCTCGTC
CAGGTTCCTG GGACGTTCGT CGACATCGTC AGAATCCTGA GGCGTCGCGA GCCGGTCCGT
CGAGGCGCAG CTTGGGGACC GGGCGGCGCT CTGGCCCGAG GCTTGATCGC GGCCTTCACT
ATCGCGCTGC TCGCGCCGCG CGCAGCCGAC ACCGCGGCGG CTGCGGCGAA GGCAACGGGC
TACGTTCTCA GCCCCACAGC CAAGATTGCC TCCGTTGCGC CGGCCGTCCC AGGCGCCCGA
TCGGCGAGCG GAGATGACTA TGTCGTTCGA TCTGGCGACA CCTTGTGGGA TATCGCGGCG
CTGCACCTCG GTGAACCTGA GCGCTGGCAC GACATCTATA GCCTGAACGT CGGCCGGGTC
CAGCCTGATG GTGGCGTGCT GTCCGATCCG CAGCTGATCC AGCCGGGCTG GCAGCTGCGT
CTCCCCGAGA ACGTCGTAGC GCCTGCCTCG GCGGTACCGG CTCCGGCGGT GTCAACCACA
AGGCCGAGCA ACGCAGGTAC CGTGCTGGTC CCGGAGCCAG TAGAGACGCC ATCTCTGATC
GCTGCGGGTG GCTCTCCGGC AGCTTCGGCA ATTCCATCCC GGGCTGAACA CCCGATCCCC
GCGCAGCGGA TCGCACCGCG CGATCGTGCA GCGGTCCGAC TGCCTGGTGG CGGAGTGGTT
CCCGTCAGCC TCGCTTCCGG TGTCGCCGCC GCGCTCGCGT TGGCGCGCCT TCGCACGCGT
GCCAGGAGCC GGATCCAGCC GGTCGATGCC CCGGGCGATT CCGAACCTCT CGCACCGCTC
CTCGAGCCCG TTCGCGCAGA GCTGTTGCGT GCACACCACG CGACGGTGTG CGCCCCGGGG
AAGGGTCTCT TCCAGGATGA CGAGGACTTT GGCGACGACC CGTTCGCCGA TGACGAACCG
CTGCCCAGCG AGCCCGAATC CGCCTCGGTG ACCGAGGACG CCCTGTGGTC GTTGAAGTCC
GAACCCGGTA CCCCACTCAC CACTCCAGAG TTCGCGCCGA GCCTTCGGGC TGTCTTGGAC
GGCGCCGATG CCCCTGATGA CGTCCACGTG GCGATCTGTG GCAACTCCCC GATTCCGTTG
GCTTCCGTCA CGACAGCAGG ACTTGGGTTG ACCGGAGACG GGGCGGCCGA CGCTGCGCGG
TCTTTGCTGG TCAGCGCACT GGCGGCCGGT GGTCCGAGGG CCATTGATCA GGCCGTCGAA
GTCCAGACTA CGGTCCAGGC GCTGTCGGTG CTGCTGGGCC CTGGCGCCCT GACCGCCGAT
TCCGATCGGC TGACGGTTTT CGACTCCTTG ACCACGTTGC TGGACGACGC TGAGCGTGAG
CAGTCGGCGC GAGCGGCGGA GGTCGCAGAG TATGGACAGG CGAACGCTGC TGACGTCCGT
CGCTTCGATA ACGTGGAGCC CTTCCGCCCC CGCATCCTGC TGGTCCATCT CGAAGCCGGC
GAACGGCACC GGCTGGAGGC GATCGCCCGT GCCGGCGGCA AGGTCGACAC TCATCTCGTG
CTGCTCGGGC CGTGGGCCGC AGGTACTTCC GTCACAATCG GCGCTGACCG CCTCCTGACA
GCCACGGGTC CCGACGCCGA GTTGCTGCGT GACGCATCGG CCTTCGGCAT CACGATGGAC
GAGGCCGAAC AGATTCTCTC TGCTCTGGGC ACTGCTGCTG AGTCGCCCGC CACTCGCGAA
CCGTTCACCG ATACCGAAGC CGATGGCGAG CCGCCGGTTG AGGCCTCGCG TCAGGACGAA
TCGGTCGTGC CGTCAGCGGC GACGCCCGAC GATACAGTCC CGGTCGTGGC CCGAGCGCAC
GTCGACCAGG GTGTTCTCCT CTTGAAGGTC ATCGGTCCCT TTACCGCCGA GATCGACGGC
CGAGACGTCA CTGGATGCTT CAACCCGAGC CACAGGACAC TTCTTCTCTA CCTCGCCCTC
CGGGAGCGCC CCGTTCGGCG AGCCGAGATC ATCGAAGCTC TGTGGACGGA CGACCAGGCC
GACGGCAAGA ACGCGGAGAA GAAGCGCAGG ACACGGTTCG ACACCCGGCT GTATCAGACC
AAGAAGGCTC TGGCCGATGC CGTCGGGCAC GACTCGGAGT TCATCTCCTC GGATCGCGCC
TCCGGCTTCA TCACGCTCAA CCGGACCCTC ATCCTCACCG ATCTCGCCTG CTTCGACCAG
CTCGTCGGCC GCGCTTCCCG AGCCGCCGAC GACGCAGAGA AGACCGCACA CCTCGAAGCA
GCATGCGCGC TGTACCGCGG ACCACTGGAC GAGAGCATCC GCGGCGACTG GCTGCTGGAG
CATCGCGAGG ACCGGCTGCG CCGCTACCGC GATGCAGCCG GCGACCTCGC CCGCATCGTC
GGCCGAACCG ACCCCGACCG CGGACTTGCC ATCCTCAACC AGCTGCTGGA GCACGACCTC
TTCAACGAGG ACCTCTACCG CCGGATCATG CGTGGGCAGG CACGGCTGGG GCGGCACGAC
GCGGTGCGAC GGACCTTCAA TCTTCTGGAG ACCCGCTTCG AAGCGGTCGA GCTCGTGGTC
GATGCATCCA CCAGGGCGCT CGTACGGACA TTGACTCGTA ACGTTTGA
|
|---|
| Protein sequence | MNLIARLSKA AFSLALTAGL SCGVPWLLLT YIGSPVPKQF PGLHEIVPAL SARFDIHVFI
TIIVYLLWAC WAVLVVQLLV QVPGTFVDIV RILRRREPVR RGAAWGPGGA LARGLIAAFT
IALLAPRAAD TAAAAAKATG YVLSPTAKIA SVAPAVPGAR SASGDDYVVR SGDTLWDIAA
LHLGEPERWH DIYSLNVGRV QPDGGVLSDP QLIQPGWQLR LPENVVAPAS AVPAPAVSTT
RPSNAGTVLV PEPVETPSLI AAGGSPAASA IPSRAEHPIP AQRIAPRDRA AVRLPGGGVV
PVSLASGVAA ALALARLRTR ARSRIQPVDA PGDSEPLAPL LEPVRAELLR AHHATVCAPG
KGLFQDDEDF GDDPFADDEP LPSEPESASV TEDALWSLKS EPGTPLTTPE FAPSLRAVLD
GADAPDDVHV AICGNSPIPL ASVTTAGLGL TGDGAADAAR SLLVSALAAG GPRAIDQAVE
VQTTVQALSV LLGPGALTAD SDRLTVFDSL TTLLDDAERE QSARAAEVAE YGQANAADVR
RFDNVEPFRP RILLVHLEAG ERHRLEAIAR AGGKVDTHLV LLGPWAAGTS VTIGADRLLT
ATGPDAELLR DASAFGITMD EAEQILSALG TAAESPATRE PFTDTEADGE PPVEASRQDE
SVVPSAATPD DTVPVVARAH VDQGVLLLKV IGPFTAEIDG RDVTGCFNPS HRTLLLYLAL
RERPVRRAEI IEALWTDDQA DGKNAEKKRR TRFDTRLYQT KKALADAVGH DSEFISSDRA
SGFITLNRTL ILTDLACFDQ LVGRASRAAD DAEKTAHLEA ACALYRGPLD ESIRGDWLLE
HREDRLRRYR DAAGDLARIV GRTDPDRGLA ILNQLLEHDL FNEDLYRRIM RGQARLGRHD
AVRRTFNLLE TRFEAVELVV DASTRALVRT LTRNV
|
|---|
| |