| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6884 |
|---|
| Symbol | |
|---|
| ID | 8338250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 7954217 |
|---|
| End bp | 7954840 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644959972 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 3 |
|---|
| Protein accession | YP_003117563 |
|---|
| Protein GI | 256395999 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR02247] Epoxide hydrolase N-terminal domain-like phosphatase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.059143 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGCGC GACGCTTCAA CGGCCTCATC TTCGACTTCT TCGGTGTCCT GACGTCGAAC
ATGGTCGAGG TCATCGAGTG CTTCGAGGAT CGGGAGAAGA TCGCCCGCGG GACGTTCCTT
CGCGCCTGGG CCGATCCCCG GGGGAGGGAC CTGTTCACGC GCCTGGAGCT CGGCGAGATC
AGCCAGACCG ACTGGAACTC GGGCTTCGCC GCGTTGATGG GCGTCGCGCC TGACGATCTG
ATGTCCCGCT ACCTCTACGA CGCGTTCCCG GCTCATGAGG TGCTCAAGGT TGCCCGGCAA
GCGCGTGCGG CCGGGTACAA GACGGCGGTG CTGTCCAACT CGCTAGGCCG TACGCCCTAC
GACCCGTACG CGGGTTTTGA CTTGCTGGGC AACTTCGATG AGGTGGTGCT GTCGCAGAAT
CACGGGCTGC GCAAGCCGGA CCCCGCTGTG TTCCAGCTTG TCCTGGACAA GCTCGGTCTG
CCCGCTGAGG AGTGCGTCTT CGTTGATGAC TCCGAAGAGA ACCTTCAGGC GGCGGTTGAT
TTGGGGATGA CGATCGTGTT CGCGCTCGAT GAACGAGAGC TTTCGGCTCG CTTGCGGACG
CTGCTGGGGC TAGGCCTCCT GTAG
|
|---|
| Protein sequence | MVARRFNGLI FDFFGVLTSN MVEVIECFED REKIARGTFL RAWADPRGRD LFTRLELGEI
SQTDWNSGFA ALMGVAPDDL MSRYLYDAFP AHEVLKVARQ ARAAGYKTAV LSNSLGRTPY
DPYAGFDLLG NFDEVVLSQN HGLRKPDPAV FQLVLDKLGL PAEECVFVDD SEENLQAAVD
LGMTIVFALD ERELSARLRT LLGLGLL
|
|---|
| |