| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6867 |
|---|
| Symbol | |
|---|
| ID | 8338233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 7931630 |
|---|
| End bp | 7933069 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644959956 |
|---|
| Product | Ricin B lectin |
|---|
| Protein accession | YP_003117547 |
|---|
| Protein GI | 256395983 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4833] Predicted glycosyl hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.269811 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCGC GAACAGGAAA GACCCGAATT CTCGGCGCGG TCGTGACAGC CGCCGCCCTC
GCCGTCTCGG TGCTGATCGG AGCAGCCGGC ACCGCTTCGG CGGCCTCGCC CGCCGCCATT
GGCGCCGCCG CGCTGATGAA GTCCTATGAC TCCACGACCG GCCAGATAGG CACGGGCTGG
TGGAACTCCG CGGTGGCCCT GAGCACGATC GAGACCTACC AGCAGACGAC GGGTGACAGC
TCGTACGCCT ACGCGATGTC CGGGGCGTTC GCCAAACACC AGTCCTCGAA CTTCGAGAAC
GAGTACATGG ACGACACCGG CTGGTGGGCC CTGGCCTGGG TCCAGGCCTA CGACATCACC
GGCAACTCCG CCTACCTGCA GATGGCCCGC ACCGATGCCG ACTACATCCA CGGCTATTGG
GATTCGACCT GCGGCGGCGG GGTCTGGTGG AGCAAGGCCA AGGGATACAA GAACGCCATC
CCCAACGAAC TCTTCCTCGA ACTGACCGCC GACCTCCACA ACCGCATCCC CGGCGACACC
CAGTACCTGG GCTGGGCGAA GCAGGAGTGG AGCTGGTTCA GCGGCAGCGG CATGATCAAC
AGCTCGCACC TGGTCAACGA CGGCCTCAGC AGCTCCTGCA AGAACAACAA CGGCATCGCC
TGGTCCTACA ACCAGGGCGT CGTACTGGGC GGCCTGGCGG CGCTGTCCCA GGCCACCGGG
GACACCAGTC TCCTCACCAC GGCCCGCCAG ATCGCCGACG CGGCGACGTC CAGCCTGTCG
CAGAACGGCG TCTTCACCGA GTCTTGCGAG CCGACGAACT GCAACCAGGA CCAGGTCTCC
TTCAAGGGCA TCTTCGTGCG CGGCTTGCGG ACCCTGGCCT CAGCCGCCGG CACCAGCGCC
TACGACGCGT GGTTCACCGC CCAGGCCGGC TCGATCGAGG CGCACGACAC CTCCGCCACG
GGGTTCGGCG TGTCCTGGGC CGGGCCGATC CGACAGCTGT CCTCCAGCTC CACGGCGAGC
GCCGAGGACG CACTCGTCGC GGCCCTGCCG GGAGCCGGAA CGCCGGCCGG CGCGATGAAA
TCGGGGATCG CCGGCAAGTG TCTGGACGAC CCCAAGGGAT CGTCGACGCC GGGAACGAAG
GCCCAGCTGT GGGACTGCAA CGGTGGATCG ACCCAGCAGT GGACGGTCGT GGGTCAGACG
CTGCGTGTTC AGGGCCTCTG CCTTGACATC ACCGGCGCCC GCACCGCCAA CGGAACGCTC
GTGGAGCTGT GGAGCTGCAA CGGCGGCGCC AACCAGAATT GGACGTCCGC CAACGGCGCT
GTGGCCAATC CCGCGACCGG CAAGTGCCTC GACGTTCCGC ACTCCAGCAC CACGAACGGC
ACTCAGCTCC AGATCTGGGA CTGCAACGGC GGCGCCAATC AGAAGTGGAT TCTGCCTTGA
|
|---|
| Protein sequence | MKARTGKTRI LGAVVTAAAL AVSVLIGAAG TASAASPAAI GAAALMKSYD STTGQIGTGW
WNSAVALSTI ETYQQTTGDS SYAYAMSGAF AKHQSSNFEN EYMDDTGWWA LAWVQAYDIT
GNSAYLQMAR TDADYIHGYW DSTCGGGVWW SKAKGYKNAI PNELFLELTA DLHNRIPGDT
QYLGWAKQEW SWFSGSGMIN SSHLVNDGLS SSCKNNNGIA WSYNQGVVLG GLAALSQATG
DTSLLTTARQ IADAATSSLS QNGVFTESCE PTNCNQDQVS FKGIFVRGLR TLASAAGTSA
YDAWFTAQAG SIEAHDTSAT GFGVSWAGPI RQLSSSSTAS AEDALVAALP GAGTPAGAMK
SGIAGKCLDD PKGSSTPGTK AQLWDCNGGS TQQWTVVGQT LRVQGLCLDI TGARTANGTL
VELWSCNGGA NQNWTSANGA VANPATGKCL DVPHSSTTNG TQLQIWDCNG GANQKWILP
|
|---|
| |