| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6844 |
|---|
| Symbol | |
|---|
| ID | 8338210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 7901223 |
|---|
| End bp | 7905629 |
|---|
| Gene Length | 4407 bp |
|---|
| Protein Length | 1468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644959935 |
|---|
| Product | Tetratricopeptide TPR_4 |
|---|
| Protein accession | YP_003117526 |
|---|
| Protein GI | 256395962 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0351351 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAAA GCCATCTGGC CGCTGCTCTT GCCCGGGCTA TGGATGCCGC CGACTGGACA
GTGGTGGCCT GGGTCAACGC CGAGCAGGAA GCGTCGGTCC CGGTGTTCTT CAGCTCGCTG
GCCCACCGGC TGGGTGTCGC GGTCCCTGAC GAACCCGCCG CCTCGGCCCA GGCTGCACTG
GATTGGCTGC GGGCCACGTC TGAACGCTGT CTACTCGTCT TCGACAACGC GGTCGATGCA
CAAGCCATAC GCCCCTGGAT TCCAGCCACA GGTCACGTCG CCACTGTCCT CACCACCAAT
GTGACCGACT TGGGCGCCCT GAGCACCGAA CCACCCATCG AGGTCGGCCC TTTCACGCTC
AGCGAGGCGG TGTCCTACCT GGACCGGCGC ACCGGGCTCG GCACAGCGGG CGCCGCCGAC
CTAGCTACGG ATCTGGGACT GCTGCCGGTG GCCCTCGCAC AGGCAGCGCC GGTGATCAGG
CACGATGGCA TCTCCTACGA GCGGTATCGG GCGCGGTTGC GGAACGTCCA GATCGGAGAG
TTACTCGGCC CGGTGCGGTC GGACACCTAC CCGTACGGAT TCGCTCAGGC GATTCTGCTT
TCGGTCGGAC GAATCGAGGA ATCCGCCGCC GAGCGGGCTG GTGACCAGGC GATCCTCGAC
CGGTTGTTAG CCGCCATGGC GCTGCTGCCG GGCGACGGGA TGCCTAGGGC ATTGCTCCAC
GCCGCTGTCC AGGCCGCCGA GAATGACATC GCCGAGGACA CCGTCGACCG CATCCTCGGC
GACATCGTCG AGAGCAGTCT TGGAGCCCGG ATCGGCTTCG AGGCGTTCGA CGTCCACATC
CTGACTCAGA CGGTACTTTT GGACCGCGCA CGGAACCGAG GGGACCTCGA GCAGGCGCTC
GCAGGTCTCG CTGGTGCGTT CGAGGCTACC GACGCCGACG AGCTCGGTTC CTGGGAGCAT
CGGATCCAGA TCCAGTGGCG AGCTCGGGCG ATCGTCCGTC TCAAACCTCA CCTCGGTCTG
CCGGACGAGC CCGAGACCAA CGCGCCCTCG TCCAAGACCG ATTCCGGGCT CGCCAACACC
GACATCGCGA CGCGGCTGCT CAACCAACTC TCCCGCTGCA CGCACCTGCT CAACGAAGCC
ACCGACTCGA CCACGGCGCA GGTCCACGGA CAGATCGCGG CCTCCGGACT GGCGGCGATC
CTCGGTTCCG ACCATCTCGA CACTCTGACG GCCAAGGACC GTCTCGGGGC TGCCTACCTA
GCCACCTTCC GGCTTCTGCA GGCAGGCACG CTGCTGGAAG AGGTCGTGGC GGCCCGGACT
CGTCTCCTGG GACCGGACCA CCCGGACACC CTGTCGACGC GATCAAAACT CGCCTGGGTG
GTCATGCGGT CTGGACGGAC CGACGATGCG ATCTCCATCC TCGCCGAGGC ACTCGAGACC
AGTCGGCAGG TTCTCGGCGA CGAGCATGCC GACACGGTCG GGTTCAAAAG CCAACTGGCG
GATTTCCAAA CTTACCGCAA CGACTTCGCG GCTGCGCTAA CTATGCATGA GGAATGCTAC
GAGACACGAC GACGAGTCCT GGGTCCCAAC GACCGGCAGA CGATCAGCTC CCGCTTCTCG
ATGCTGATCG CCCACCGAGG CCTCGGCCAC CACGCGGAGG CACTCGCGCT AGCGGAGGAA
ATGGCCGCAA CCGCTCAGCG TGACCACAGC CAGGACATCT CGCAGATCGT CGCGATCACA
AGCATGCTGG CCGCCCTCTA CCAGGACGAG GGCCGGGCGC CGGAAAGTGC GATCGCCTCC
GAACGTGTCG TTGAACTAAG TAAAGCCGCA TTCGGCGAGC ACCATCAGCT CACGCTGAAC
TACGTGCTTA TCCTTGCGGC CACCTACAGA GCCGCCGGCC GGCCCGACGA CGCCCTGCAG
CTCTATGAAC GCACGCTGCC GATCGCGCAG GCGGCGCTTG GTGAAGACAG CGTCGTCGCT
CTCAACTGTG TCGGCAGTCT AAGCGACATC TATCGCGAAC AGGGCCGGTT CCGGGAAGCA
GTCGACTTGG CCGGTGTCGT TTTGGAAGAG CAGGAGCGTG GATTCGGCGA CGATCATCCG
ATCACCCTCC ACGGCCGTGT CAAGTTCGCT ACCTCGCTCT TCGGCATCGG GCAGTTCGAT
CAGGGGATCG CAGTGCTGGA GAAGGTGCTC GCAACGCGCC GGCGGATTCT CGGAGAGGAG
CATGTCGACA CCCTCGAATG CCGTGAAAGC ATCGCAATCG CTCGACTCGC GCTCAACCAG
AACCACGCTG CGGTCGCCCT TCTCTCCGAA CTGGCCGCCG ATCGCGAAAG CTTTCAAGGG
AGAACCCACA ACGCGACGTT GACCACGCGC GGCAAGCTGG CCGAGGCCCT GGGGCGGCAT
GGCCGTCCGA GCGAAGCGAT CGCAATGCTG GAAGAGATTG TCGCGACTCG ACGGCAGGTC
CGCGGCGACG ACGACCTCTG GGTCCTCAGG GACCAGGCAC ACCTCGGCAA AGCGTACCTT
GCGTTCGGGC GCACGATCGA GGCCGTTTCC ATCGGCGAAT ATGTCGTCGC CGAAACTGGC
CGTCTCCGAG GTGAAAGCCA TATGGACACT CTCGACGCCG TGGCCGAACT TGCTGACACG
TACGAGTCTG CGGGGCGCCG CCGGGAAGCG ATCCCACTGC GGGAGCGAGT GCTGACCGGA
CGGGTCGAGC ACTTCGGCAG ACTTCACGAG AAGTCAGCCT CGGCTCGCCG GAGCTTGGCC
GACGCGTACA TCAAAGCCGG CGACACGGAG CGAGGGCTGG CCCTGCATGT CCAAATCAAA
ATGGAGACGG GCAGAAGCTT TGGCCACGAA TGGTCACGAG TCGCGGGAGC AGTCCTGGCC
GAGGCATACC TCACCGCCGG CCGGATCGAT GAAGCAGTCA CGCTGATGAA GGAAGCCCTT
GCGGCCTCTG TACAAACATT CGGGAAAGAT CATTACATCA CCACGCGCAT CCGCGAAGCG
CTCACCGATC TCTACGGAAA GGCCGGGTTC ACGGCCCAAG CCGCAGCGAT GCTGGAAGCC
AATTGGGAAC GCGAGCGAGG TTACCGCGAC CCCGAGGATC CGTACCTGCT GGGCTACCAA
GCTCAACTTG CCGAAAGTTA TGCGGCGGCC GATCGCGCCA ACGAGGCGAT CAACATCTAC
GAGAGCCTCA TCGCCGAGGT CAACGGACGT ACGGACCTGG CCGAGCAGCA GATCATCGCG
ATGCGACTGC GCCGAGGCCT TGCCATGGCC TATGCCAGGG CGAGAAAGTA CGACGACGGC
GTTCGAATGC TCGGCGACCT CGTGGCGGAG GCGGAACACT CCTTCGGGAC GACTCATGAG
TGGACTCTCG GCTGGCGTTC GGAGTACGCC GAGGCGTTGG CGGGCACAGA GCGACTCAGC
GAGGCCATCG AAATGTACGA AGCGCTGCGG TCCGACATAC GCCAGGGCTA CGGAGCGAAT
CAACTGGCAG TCTCCGGGAC TGAGGCCGCT CTCGCTTTTG CTTACATCGC CGCCGGACGG
ATCGACGACG GCCTGCGGCT CCTGGAGGCC ACCACCGATG CACTCGCCGC GGCGGAGGGA
GCCGGACATC CGGAGGCCCT CAGCGCACGC AATCGGCTGG CCCAAGTCCT AGCGAAAATC
GGCCGGACCG ACGATGCGAT CACACTGATC GAACAAGTCA TCGCGGCGAT GATCGCGAAC
TTGGGACCGG AGCACCCCTA CGTCCTGCAG AGCCGCTACG AGCTGATCGG CATGTATCGC
AGCGCCTCAC GGGCCGCCGA GTCACTGACC ATGCTCAGTA CCTTGGTAAC GGATGAACGC
CAGATTCTGG GCGAAGGCCA CCCCACGGTC CTCGAGCACC GCGGCGAGCT TGCGAACGCG
TATCGGGAAA GCGGGCAAGC CCTCGAAGCC GTCCGGCAAT ACCAAGTGCT GCTCAAGGAC
GATGCACGCT ACGTGGGACC TCGCGGTGAG CTGATGATCA TCCACCGGGC GGGCCTGATA
TGGTCCAGCG TAGATATCGG CCGGATCATG GAGGCCATTG CCATGTGCGA GCAGCTGATC
CCCGACGTCG AAGCAAGCGG GGGGACGGAG AGCAATGCCG CCAAGTCTAT ACGCGAAGTG
CGCGTTGACT TGGAGCGAAT GGTCACCGGA CTCCGGTCTG AAGCGGTCAA GCTAGCGAAA
ACACAGGCCA CTGCAAAGCC CGACGCCTCG ACGTTGGCAC ATTATTTCAC CGAGAGCGAC
GCCGCACTGC GTCAACAGGG TGCAGCGGTC GCAGCCCTCT GCGGCCGGTC GTCAACTGAA
ATTGCGCCTC CGGCTGCAAC GAGCGCTAAG TGCGCCAGGT GCCAGATGAT CTACCTGAGA
GTTCCCTCGG ATGACCGGCA CGAGTGA
|
|---|
| Protein sequence | MGKSHLAAAL ARAMDAADWT VVAWVNAEQE ASVPVFFSSL AHRLGVAVPD EPAASAQAAL
DWLRATSERC LLVFDNAVDA QAIRPWIPAT GHVATVLTTN VTDLGALSTE PPIEVGPFTL
SEAVSYLDRR TGLGTAGAAD LATDLGLLPV ALAQAAPVIR HDGISYERYR ARLRNVQIGE
LLGPVRSDTY PYGFAQAILL SVGRIEESAA ERAGDQAILD RLLAAMALLP GDGMPRALLH
AAVQAAENDI AEDTVDRILG DIVESSLGAR IGFEAFDVHI LTQTVLLDRA RNRGDLEQAL
AGLAGAFEAT DADELGSWEH RIQIQWRARA IVRLKPHLGL PDEPETNAPS SKTDSGLANT
DIATRLLNQL SRCTHLLNEA TDSTTAQVHG QIAASGLAAI LGSDHLDTLT AKDRLGAAYL
ATFRLLQAGT LLEEVVAART RLLGPDHPDT LSTRSKLAWV VMRSGRTDDA ISILAEALET
SRQVLGDEHA DTVGFKSQLA DFQTYRNDFA AALTMHEECY ETRRRVLGPN DRQTISSRFS
MLIAHRGLGH HAEALALAEE MAATAQRDHS QDISQIVAIT SMLAALYQDE GRAPESAIAS
ERVVELSKAA FGEHHQLTLN YVLILAATYR AAGRPDDALQ LYERTLPIAQ AALGEDSVVA
LNCVGSLSDI YREQGRFREA VDLAGVVLEE QERGFGDDHP ITLHGRVKFA TSLFGIGQFD
QGIAVLEKVL ATRRRILGEE HVDTLECRES IAIARLALNQ NHAAVALLSE LAADRESFQG
RTHNATLTTR GKLAEALGRH GRPSEAIAML EEIVATRRQV RGDDDLWVLR DQAHLGKAYL
AFGRTIEAVS IGEYVVAETG RLRGESHMDT LDAVAELADT YESAGRRREA IPLRERVLTG
RVEHFGRLHE KSASARRSLA DAYIKAGDTE RGLALHVQIK METGRSFGHE WSRVAGAVLA
EAYLTAGRID EAVTLMKEAL AASVQTFGKD HYITTRIREA LTDLYGKAGF TAQAAAMLEA
NWERERGYRD PEDPYLLGYQ AQLAESYAAA DRANEAINIY ESLIAEVNGR TDLAEQQIIA
MRLRRGLAMA YARARKYDDG VRMLGDLVAE AEHSFGTTHE WTLGWRSEYA EALAGTERLS
EAIEMYEALR SDIRQGYGAN QLAVSGTEAA LAFAYIAAGR IDDGLRLLEA TTDALAAAEG
AGHPEALSAR NRLAQVLAKI GRTDDAITLI EQVIAAMIAN LGPEHPYVLQ SRYELIGMYR
SASRAAESLT MLSTLVTDER QILGEGHPTV LEHRGELANA YRESGQALEA VRQYQVLLKD
DARYVGPRGE LMIIHRAGLI WSSVDIGRIM EAIAMCEQLI PDVEASGGTE SNAAKSIREV
RVDLERMVTG LRSEAVKLAK TQATAKPDAS TLAHYFTESD AALRQQGAAV AALCGRSSTE
IAPPAATSAK CARCQMIYLR VPSDDRHE
|
|---|
| |