| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6788 |
|---|
| Symbol | |
|---|
| ID | 8338152 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 7834479 |
|---|
| End bp | 7835171 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644959878 |
|---|
| Product | two component transcriptional regulator, winged helix family |
|---|
| Protein accession | YP_003117471 |
|---|
| Protein GI | 256395907 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.241896 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCCGCA TCCTGGTCGT CGACGACGAG CCGCAGATCC TGCGCGCCCT GCGCATCAAC
CTGAAATCCC GGACGTACGA CGTCGAGACG GTGGCCAACG GCGTGGACGC GTTGGCCTCA
GCGGCGCGCC GCCTGCCCGA CGCGGTCCTG CTCGACCTCG GCCTGCCGGA CATGGACGGT
GTGGAGGTGA TCCTCGGTCT GCGCGGCTGG ACAACCGTCC CGATCGTGGT CCTGTCCGGA
CGCACCGACC CGCAGGAGAA GATCCACGCG CTCGACGCCG GCGCCGACGA CTTCGTGACC
AAGCCCTTCG CCATGGAGGA GCTGCTGGCC CGGCTGCGCG CGGTGATCCG CCGCCACCAA
CAGGCCAACG CCGGCGCGAC CGGCGCCGAG ACCAGCTCGG TCCGTCTGGG CAGCTGCGAC
ATCGACCTCG TGGCGCACAG CGTGGCGCGC GGAGGCGATC CGGTTCGCCT GACCCGCACC
GAGTGGGCGC TGCTGGAGGT CCTGCTGCGC CACCCCGGTC AGCTGGTGAG CACCTCGCGC
CTGCTGGCGG ACGTGTGGGG CAACAGCCAC ACCGGCGAGG CCGGATATCT GCGGTTCCAC
ATGGCCCGGC TGCGCCGCAA GCTCGAGGAC GACCCGCAGA ATCCGCGACA CCTGATGACG
GAGTACGGGA CCGGATACCG GTTCGTGCCC TGA
|
|---|
| Protein sequence | MTRILVVDDE PQILRALRIN LKSRTYDVET VANGVDALAS AARRLPDAVL LDLGLPDMDG
VEVILGLRGW TTVPIVVLSG RTDPQEKIHA LDAGADDFVT KPFAMEELLA RLRAVIRRHQ
QANAGATGAE TSSVRLGSCD IDLVAHSVAR GGDPVRLTRT EWALLEVLLR HPGQLVSTSR
LLADVWGNSH TGEAGYLRFH MARLRRKLED DPQNPRHLMT EYGTGYRFVP
|
|---|
| |