| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6776 |
|---|
| Symbol | |
|---|
| ID | 8338140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 7821331 |
|---|
| End bp | 7823448 |
|---|
| Gene Length | 2118 bp |
|---|
| Protein Length | 705 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644959866 |
|---|
| Product | 3-hydroxyacyl-CoA dehydrogenase NAD-binding |
|---|
| Protein accession | YP_003117459 |
|---|
| Protein GI | 256395895 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.781156 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.228241 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTCAGG ACCTCACCGC TCTGGCTACG GAACTCTTCC CGGACGAGGT GGTCACCAAC
GCGCCGGTCC AGTTCTTCGA CCTGCCCGGG CACTCCGGCC GCTTCGCGCT GATCACGCTG
GACAACGGCT TCGACCACAC CAAGCCGAAC ACTTTCGGTC CCGGCGGCCT GGTGCGGCTG
GGCCAGGCCA TCGACCTGGT CGAGGCCGCG GCGGGGCGCA ACGAGATCGT CGGCGTCGGC
GTGACCGGCA AGCCGTTCAT CTTCGCCGTC GGCGCCGACC TCAAGGGTGT CGAGGTCGTG
AAGAACCGCG ACCAGGCCCT GGCGATCGCC CAGGCCGGAC ACGACACCTT CAAGCGCCTG
TCCGCGTTGT CAGTACCCTC CTTCGCCTTC GTCAACGGCG CGGCCATGGG CGGCGGCGTC
GAGGTCGCGC TGGCCTGCAC CTACCGCACC ATCTCCTCCG GGGTGCCGGC GCTGGCCTTC
CCCGAGTGCT TCCTCGGCCT GGTCCCCGGC TGGGGCGGCT GCACGCTGCT GCCCAAGCTG
ATCGGCCCGG ACGCCGCGGT CACCGTCATC ATCGAGAACG CGCTGTCGCA GAACCGGATG
CTCAAGGGTC CGAAGGCCTT CGAGCTCGGC ATCGCCGACG CGATGTTCGA GCCGGTGGCC
TTCCTGGAGC AGTCGCTGGC CTGGGCCGAG AGCGTCATCA ACGGCTCGCT CGTGGTCGAG
CGCAAGCAGT TCAGCGCCGA GGACTACGCC GCCGCCGTGG CGCGTGGACG TCAGGTTGCT
GATTCCAAGG TGCACGGCGC CGCCCCGGCT CCCTACCGCG CCCTGGACAT CATCGAGAAG
ATGGCCACCG CTTCCAACGA CGAGGGCTTC GCTCTCGAGG ACGCGGCGCT CGCCGACCTG
ATCATGACCG ACGAGCTGCG GGCCGGCCTG TACGCGTTCA ACCTGAACCA GAAGCGCGCC
AAGAAGCCCT TCGGCGCCCC GGACAAGGCG CTGGCGCGGC CGGTGACCAA GGTCGGCGTG
GTCGGCGCGG GCCTGATGGC CTCGCAGTTC GCGCTGCTGT TCGTGCAGCG GCTGCAGGTG
CCGGTCGTGA TGACCGACAT CGACCAGGCG CGCGTGGACA AGGGCGTCGG CTACGTGCAC
GAGCAGATCG GCATGCTCCA GCTCAAGGGC CGGCTCAACC AGGACCAGGC GAACCGTCTC
AAGGCTCTGG TATCCGGTTC GCTGACCAAG GACGCGTTCG CCGACGCCGA CCTGGTCATC
GAGGCCGTCT TCGAGGAGAT GTCGGTCAAG CAGCAGGTGT TCGCCGAGGT CGAGGCCGTG
GTCCGCGAGG ACTGCGTGCT GGCGACCAAC ACCTCCTCGC TGTCGGTGAC CGAGATGGCC
TCCAAGCTCG AGCACCCCGA GCGGGTCGTC GGCTTCCACT TCTTCAACCC GGTGGCCGTG
CTGCCGCTGC TGGAGATCGT GCGCGCCGAG CAGACCGACG ACGCCTCGCT GGCTACCGCG
TTCGCGGTCG GCAAGACGCT GAAGAAGTCC TGCGTGCTGG TCAAGGACGC CCCGGCGTTC
GTCGTGAACC GGCTGCTGAC CCGCTTCCTC GGCGAGGTCA CCGCGGCGGT GGACGAGGGC
ACGCCGATCG AGGTCGCCGA CCGCGCCCTG GCGCCGCTGG GCCTGCCGAT GTCGCCGTTC
GTGCTGCTGG AGCTGGTCGG CCCGGCGGTG GCGCTGCACG TCGCCGAGAC GCTGCACACC
GCCTTCCCGG ACCGCTTCCA GGTCTCGCCG AACCTGGCGA AGCTGGTCGC CGCCGGCAAG
AAGGCGATCT ACAGCTGGGA CACCGGCGTG CCGGTCATCG ACCCGGAGGT CCTGGAGCTG
TTCCAGCCCG GTCCGTCCCC CTCGACGGAA GAGCAGGTCC GCGACCGCGC GCTGAAGGCG
ATGGCGCAGG AAATCGACCT GATGCTCAGC GAGGGCGTGG TCGGCGAGGC GCAGGACATC
GACCTGTGCA TGCTGCTCGG CGCCGGCTGG CCGTTCCATC TCGGCGGCAT CACGCCGTAC
CTGGACCGGA CCGGGGTGTC GGAGGCCGTC GCCGGCCACC GATTCCTGGC TCCGGGGGTG
GCTTCCCTGC CGGAATAA
|
|---|
| Protein sequence | MTQDLTALAT ELFPDEVVTN APVQFFDLPG HSGRFALITL DNGFDHTKPN TFGPGGLVRL
GQAIDLVEAA AGRNEIVGVG VTGKPFIFAV GADLKGVEVV KNRDQALAIA QAGHDTFKRL
SALSVPSFAF VNGAAMGGGV EVALACTYRT ISSGVPALAF PECFLGLVPG WGGCTLLPKL
IGPDAAVTVI IENALSQNRM LKGPKAFELG IADAMFEPVA FLEQSLAWAE SVINGSLVVE
RKQFSAEDYA AAVARGRQVA DSKVHGAAPA PYRALDIIEK MATASNDEGF ALEDAALADL
IMTDELRAGL YAFNLNQKRA KKPFGAPDKA LARPVTKVGV VGAGLMASQF ALLFVQRLQV
PVVMTDIDQA RVDKGVGYVH EQIGMLQLKG RLNQDQANRL KALVSGSLTK DAFADADLVI
EAVFEEMSVK QQVFAEVEAV VREDCVLATN TSSLSVTEMA SKLEHPERVV GFHFFNPVAV
LPLLEIVRAE QTDDASLATA FAVGKTLKKS CVLVKDAPAF VVNRLLTRFL GEVTAAVDEG
TPIEVADRAL APLGLPMSPF VLLELVGPAV ALHVAETLHT AFPDRFQVSP NLAKLVAAGK
KAIYSWDTGV PVIDPEVLEL FQPGPSPSTE EQVRDRALKA MAQEIDLMLS EGVVGEAQDI
DLCMLLGAGW PFHLGGITPY LDRTGVSEAV AGHRFLAPGV ASLPE
|
|---|
| |