Gene Caci_6667 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6667 
Symbol 
ID8338031 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp7682354 
End bp7683217 
Gene Length864 bp 
Protein Length287 aa 
Translation table11 
GC content74% 
IMG OID644959761 
Productsqualene synthase HpnD 
Protein accessionYP_003117354 
Protein GI256395790 
COG category[I] Lipid transport and metabolism 
COG ID[COG1562] Phytoene/squalene synthetase 
TIGRFAM ID[TIGR03465] squalene synthase HpnD 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.349811 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCCCC AAGCCGCCTA CGAGCACTGC GAACGGGTGG TCCGCTCCCG GGCCCGGAAC 
TTCGCGTACG GCATCCGCCT GCTGCCGACG ACCAAACGCC AGGCGCTGTC CGCGGTGTAC
GCCTTCGCGC GCCGCGTCGA CGACATCGGC GACGGCTCGG AGACCCGCGG CGAGCGCCTG
ACCCAGCTGG CCGCCGCCCG CGAGGAGCTG CACCGCATCG ACGAGCATCC GGAGGACCCG
GTCCTGGTCG CGCTCGCCGA CGCCGCGCGC CAGCACCCGA TCCCGCTGGC CGCCTTCGAC
GAGCTCATCG ACGGCTGTGA GGCCGACGTC CGCGGAACCG ACTACGCCAC CGCCGACCAG
CTGACCTTCT ACTGCCGCTG CGTCGCCGGG TCCATCGGCC GGCTCTCCCT CGGCGTCTAC
GGCGTCGACC CCGCGCGCCA GAAGGAAGCC TCCGGCTACG CCGACTCCCT CGGGGTCGCG
CTCCAGCTCA CCAACATCCT GCGCGACATC CGCGAGGACG GCCTGATGGG CCGCGTCTAC
CTCCCGGCCG ACGAGCTGGT CCGGCACGGC TGCACGCTCA AGATCGACGA GCACGGCCGC
TTCGTCGACG ACGACGCCGA CCTCGCCGCC CTGGTCCGCG ACCAGGCGGC GCGCGCCCGA
GCCTGGTACG ACGAAGGCCT GCGCCTGCTG CCGCTGCTGG ACCGCCGCAG CGCCGCCTGC
ACCGCGGCGA TGGCCGGCAT CTACCGCCGG CTGCTGATCC GCATCGCCGA GCAGCCGATC
AGCGCCCTGA ACGCCCGGAT GTCGCTGCCG GCCTGGGAGA AGGGCGTGGT CGCGGCCCGC
GCGCTGGCCG GGGTGACGCC GTGA
 
Protein sequence
MDPQAAYEHC ERVVRSRARN FAYGIRLLPT TKRQALSAVY AFARRVDDIG DGSETRGERL 
TQLAAAREEL HRIDEHPEDP VLVALADAAR QHPIPLAAFD ELIDGCEADV RGTDYATADQ
LTFYCRCVAG SIGRLSLGVY GVDPARQKEA SGYADSLGVA LQLTNILRDI REDGLMGRVY
LPADELVRHG CTLKIDEHGR FVDDDADLAA LVRDQAARAR AWYDEGLRLL PLLDRRSAAC
TAAMAGIYRR LLIRIAEQPI SALNARMSLP AWEKGVVAAR ALAGVTP