| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6664 |
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| Symbol | |
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| ID | 8338028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 7678067 |
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| End bp | 7680001 |
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| Gene Length | 1935 bp |
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| Protein Length | 644 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644959758 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_003117351 |
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| Protein GI | 256395787 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.303504 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACTGACG TCATCGACAA AGCCGTCGCG GCGACCGGGC CGGCCGATCC CTCCCAGGGC
GCGGCCGCGA CGCTCCAGGC CGCCGCCGAC CACCTGCTCG GGCTGCAGGA CGACGCCGGC
TGGTGGAAGG GCGAACTCGA GACGAACGTC ACGATGGACG CCGAAGACCT TCTGCTGCGC
CAGTTTCTCG GCATCCGCAC CGAGGAGGTG ACCCGCGAAG CCGGCGACTG GATCCGCTCC
CAGCAACGCG CCGACGGCAC ATGGGCGAAC TTCTTCGACG GCCCGGCCGA CCTGTCGACG
ACCATCGAGG CCTACACGGC GCTGCGCATG GCCGGGGACG CGAAGGACGC CGAGCACATG
CGCGCGGCGC GTACCTACAT CCTGGACTCC GGCGGCATCG AGGCCAGCCG GGTCTTCACC
CGGATCTGGC TCGCGCTGTT CGGCGAATGG CAGTGGTCTG ACTTGCCGGT CATGCCGCCG
GAGCTGATCT ACCTGCCGAA GTGGTTCCCG CTCAACGTCT ACGACTGGGC GTGCTGGGCC
CGGCAGACCG TGGTGCCGTT GACGATCGTC AATGCTCTGC GTCCCGTCCG GCCGCTCGGC
TTCGACCTGA AGGAGCTGCG GACCGGTCGG CGCGCGCCGG CGCAGCGCGG CTTGTTCAGC
ACGCTCGATC GCGCGTTGCA CGTCTATGAG CGGAAGCCGC TGCGCTCGGT CCGGGACGCG
GCGCTGCGCC GCTCCGCGGA CTGGATCATC GCGCGTCAGG AGGCTGATGG TTCCTGGGGC
GGGATCCAGC CGCCGTGGGT GTATTCGCTG ATGGCGTTGA ACCTGCTCGG ATACGGCGTG
GACCACCCGG TGATGCGCAA GGGCATCGAG GGCTTGGACC GCTTCACGAT CCGCGACGAG
CGCGGGCGGC GGCTGGAGGC GTGTCAGTCC CCTGTGTGGG ACACCGTCCT GGCGATGACC
GCGCTGCGCG ACGCCGAGCT GCCCGAGAAT CATCCGGCGC TGGTGAAGGC CGCCGATTGG
GTGCTGGGGG AGGAGATCAC CAACCCCGGC GACTGGTCGG TGCGGCGTCC GCGCGTGGCG
CCCGGCGGCT GGGCGTTCGA GTTCGACAAC GACGGCTACC CGGATGTCGA CGACACCGCC
GAGGTGGTGC TCGCGCTGAA CCGCGTCGCG CATCCGGACG CCCCCGCCGC CATCCGCCGG
GGCGTCGACT GGCTGGAAGG CATGGCCTGC AAGGACGGCG GCTACGGCGC CTTCGACGCC
GACAACACCC GCACGCTGGC GCTCAAGCTG CCGTTCTGCG ACTTCGGGGC GGTCATCGAT
CCGCCGACCG CCGACGTCAC GGCGCACACG CTGGAGGCGT ACGCGGCCCT CGGGCTTGCG
AACTCGCGGG CGTCGCAACG CGCTTTGGAG TGGCTGGTGA AGGCGCAGGA GCGCGACGGC
TCGTGGTTCG GGCGCTGGGG CGCCAACCAT GTCTACGGCA CCGGCGCCGT GGTCCCGGCG
ATGGTCGCCG TCGGCGTCGA TCCCGAGGAC GAGATGATCC GCCGGGCCGT TCGCTGGCTG
GAGGAGCACC AGAACGACGA CGGCGGGTGG GGCGAGGACC TGCGCTCCTA CCGCGACAAG
AGCTGGATCG GGCGCGGGGT CTCGACGGCG TCGCAGACCG CGTGGGCGTT GCTGGCGTTG
CTGGCGGCGG GGGAGGAGCG CGGGACGGCG GTCGAGCAGG GCGTCAGGTT CCTGATCCGC
ACGCAGCGCG CGGACGGTAC GTGGGACGAG GACCACTACA CCGGCACCGG CTTCCCCGGC
GACTTCTACC TGAACTACCA CCTGTATCGG CTCGTCTTCC CGATCAGCGC CCTCGGCCGC
TATGTGCGTG CTGTGGGAGC GGCGGGAGAC GGGGGAGATG CGGGACATGC GGGACATGCG
GGGACCGTGT CATGA
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| Protein sequence | MTDVIDKAVA ATGPADPSQG AAATLQAAAD HLLGLQDDAG WWKGELETNV TMDAEDLLLR
QFLGIRTEEV TREAGDWIRS QQRADGTWAN FFDGPADLST TIEAYTALRM AGDAKDAEHM
RAARTYILDS GGIEASRVFT RIWLALFGEW QWSDLPVMPP ELIYLPKWFP LNVYDWACWA
RQTVVPLTIV NALRPVRPLG FDLKELRTGR RAPAQRGLFS TLDRALHVYE RKPLRSVRDA
ALRRSADWII ARQEADGSWG GIQPPWVYSL MALNLLGYGV DHPVMRKGIE GLDRFTIRDE
RGRRLEACQS PVWDTVLAMT ALRDAELPEN HPALVKAADW VLGEEITNPG DWSVRRPRVA
PGGWAFEFDN DGYPDVDDTA EVVLALNRVA HPDAPAAIRR GVDWLEGMAC KDGGYGAFDA
DNTRTLALKL PFCDFGAVID PPTADVTAHT LEAYAALGLA NSRASQRALE WLVKAQERDG
SWFGRWGANH VYGTGAVVPA MVAVGVDPED EMIRRAVRWL EEHQNDDGGW GEDLRSYRDK
SWIGRGVSTA SQTAWALLAL LAAGEERGTA VEQGVRFLIR TQRADGTWDE DHYTGTGFPG
DFYLNYHLYR LVFPISALGR YVRAVGAAGD GGDAGHAGHA GTVS
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