Gene Caci_6560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6560 
Symbol 
ID8337924 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp7554838 
End bp7555449 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content69% 
IMG OID644959654 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003117247 
Protein GI256395683 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACGAA CAGTGGGCAG CAACGCGACG GACACCAGGC GCCGCATCCT GGACTCGGCC 
ACCGAGGTCT TCGCCGAGCA CGGATACTCC GGTGCCTCGA TGCGCGACAT CGCCGAGCGG
CTGGGCATCA CCAAAGCCGG GCTCTACTAC CACTTCGCGT CCAAGGAAGA GCTGCTCGAC
GGCCTGATCC GGCCGGTGCT GCAGAAGATG AGGGACTTCG CCGACGCGGC GGAGGCCGGC
CACTACCCGA CCCGCCAGTT CCTGCGCGAA TTCCTCGACC TGATCATCGA CGGCGTCCCG
GCCCTGCAGC CGCTGTTCAT GGACCCCGGC GCCCGAGCCG CGATCAAGGA ACGCTACGAC
CCGATGGATC TCGGACGCCG CATCGAAGCC GCGCTCACAG ACGGCGCCGA TCCCGATCGT
GCGCTGCGCG TGCAGTTCGT CCTGGGGGGC ATCCGCTCAC TGGTGATCGG GCACAAGTTC
AGGGCACACG GCGAGGCGTA CGGGCCCCAC GGACATCCCG CGGCTGCCGG CCCGGCGACA
CTCACCGACG CCGAGCGCGA AGTCATCGTC GACGCGGCGT TGGCCGGACT CGGGGAAGGC
GGCTTGGCTT AG
 
Protein sequence
MARTVGSNAT DTRRRILDSA TEVFAEHGYS GASMRDIAER LGITKAGLYY HFASKEELLD 
GLIRPVLQKM RDFADAAEAG HYPTRQFLRE FLDLIIDGVP ALQPLFMDPG ARAAIKERYD
PMDLGRRIEA ALTDGADPDR ALRVQFVLGG IRSLVIGHKF RAHGEAYGPH GHPAAAGPAT
LTDAEREVIV DAALAGLGEG GLA