| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6515 |
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| Symbol | |
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| ID | 8337879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 7507099 |
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| End bp | 7510113 |
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| Gene Length | 3015 bp |
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| Protein Length | 1004 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644959612 |
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| Product | transcriptional regulator, SARP family |
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| Protein accession | YP_003117205 |
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| Protein GI | 256395641 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3629] DNA-binding transcriptional activator of the SARP family |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.409149 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.360927 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACTT TTTCGATTCT CGGGCCTGTG GAGGTGCGGG TCGATGGTTA CCCGGTGAGC
GTTCCGCGGC CGCGTCGGCG GGCCGTGCTC GCCTACCTGC TGCTGCATGC GAATGACCGG
GTGGAGACCG AACAGCTGAT CGGTGCGTTG TGGGACGCCG AACCGCCCAG AACGGCGCGG
GCACAGGTGC ATTCGGCAGT TTCGGCTCTG CGGACCGGGC TGCCGGGGAC GCTCGGCGAA
GGCCTGGTGT CGCAGACCAG TGGCTACCGG TTGACTGTCG CCGCCGATCA ACTCGACCTG
ACGCTCTTTC GCCGGCTGAC AAGCGCGGCG AGAGCGCAGA TGGCGAGCAG ACAGTTCGAC
ACCGCGGTGG GGTCGCTGCG TGCGGCCCTG GCATTGTGGC GGGGCGCGGC GTTGGCGGGG
GTGGAGGCGC CTTTCGTCGA GCCGGCGCGC ACGCGGCTGG AGGAGGAGCG GTTCAGCGCG
TATGAAGCGC TGGCCGATCT GGAGATGGCA GCGGGTCGGC ACGTGGATCT GGTGCCGTTG
CTGACCGGAT TGCTGAACGA GTACCCGACC CGGGAGTCGC TCGTGGAGCG GCTCGCCCTG
GCCCTGTACC GGGGCGGGCG GAAGACGGAT GCGCTGGCTC TCGTGCGAAA GCTGCGGACC
CTGCTCGCCG AGGAATACGG CCTCGACCCG GAGCGCAGCA TCGTGGAGCT GGAAAACTCC
ATGCTGCGAG GGGATCCGGC TCTGGAGCAT CAGTGGCCTG CGATGTCGGC ACAACCACTG
AGCCGATCCG AAGCGGGTGC CGAAACCGGT GCCGCCGCGG GCGCCAGGCC CGGGGCTTCG
ACCACCGGGG CCGCGCCGGC CGCGCCCGCC GCGCCCACGC TCACCGTCCC CACTCCGGTC
CCCACTCCGG TCCCCACTCC GGCGCCCGTT CCAGTTCCGG CCGCACGCAC CCTGCCCCGG
CCCGCCCAGC TGCCCCGCGC CAGCGCGGGC TTCGTCGGCC GCGCCGCCGA GTTGAGCCGC
CTGACCCGGC TGCTCGGCTC CGACAACGAT TCCCCCTACA TCGCCGTGGT CACCGGGCCG
GCCGGAGTCG GGAAGACTGC CCTGGCCCTG CTGTGGGCAC ACCGCCAGGC CGACGCGTTC
CCCGACGGAC AGCTCTTCGT CGACCTCCAC GGCTACGACC GCATCGAGGC CGAGAACGCC
GACAGCGTGC TGGAGCGTTT CCTGCTCGCT CTGGGCATCC CGGGGCACGA CATACCCTCG
GGGCTCCCCA AACGCGAAGA TCTGTTCCGC TCGGCGGTGG CCAACCGCCG TATGCTGCTG
GTTCTGGACA ACGCGCGGGA CTACCAGCAG ATCAGCCCTC TGCTTCCGGG TTCAGCACTC
AGCCGCACCG TCATCACCAG CCGTGCGCGC ATGGGCAGCC TCGTGGCCGA CACCGGCGCA
CTGACCGTCC AGCTCGGCGT ACTGCCGCTG GATGAATCAG TCGAAGTACT CGCGCGCATC
GTCGGGCCCG ACGCCGTTGC CGGCGCGCCC GATGCGTCGC GCGAGCTGGC GCGCCTATGC
GCAGGACTCC CCTTGGCATT GCGTATCTCG GCAGTCCGCT TGCTCGAGGA ATCCACCGCC
GGAATCGCCG GCCTCGCAGC CGAGCTGACG TCCGAAGAGC ACCGCCTTTC GGCTCTGGAT
CTGCTCGACG ACGGCCGCAC CGTCTCCCAG GCCCTGGAAC ACTCGCACCG CGGGCTCTCC
GCCGAACAGG GCCGCCTGTT CCGCCTCCTG AGCCGACACC CCGTCGGCAC CGTGAGCGCG
GCCGCAGCGC ATGCTCTCGC AGACCACGGC GAGCTGCGCT TCGCAGCGAC GCACGCCACG
CAGCGCCTGT TGCGTGCGCT GGAAGCTGTT TACCTGCTTG ACCAGAGCAC TGATGGCTAC
CAGATGCACG ACCTGGTTCG GCTGTACGGT CGCAGCCGCC GGGAACCGGA TGACGACGCC
GCGTACGGCC GCGTCATCGA CTGGTACATC AGCGTCGCCG CCGCGGGGTT CGCCGTGCTG
GCCCCGACGC AGCCGCGGCT GCCCGCCGAC GTCACACACC GGTTGACCAC CTCCGACGCG
GAGCCCTTCG ACGGCGAAGC AGCGGCCCTG GCCTGGTTCG AAGAACAGAT CGACAACCTC
GTGGCGGTGC TCAGGCACGC CGCCGAACGC GAAGAGCACC GTGTGGTGTG GCAGATCGCC
GTCGGCGTCA GCCCCTATCT GCTGCGCCGC CACCGTTTGG ACGCCCTCGT GGAAACCCAG
CGGCTCGGTG AGCGGGCAGC CCTCGGCGCG GACAACCCGC CGGCCGCCGC CGTGCTGGCG
AACAACCTCG GCATCGCGTA CGCCATGCGT CAGGACCCGC AGGCCCAGGA ACCTTTCGAG
CGGGCAGCGG CGATCCACCG CGCGCTGGGC GACCGTCGCC GAGCCGCCGG GGTCATGGCG
AACCTCGGCA GCCTGCGTTA CGGCCTCGGC ATGCTGTCGA AGGCCGCCGA GACGCAGCGC
AGGAGCCTGG AGGAGTTGCG TGAGTTCGGG CACAGCCAAG CGCTGTCCGC CGCGCTCGCC
AACCTCGGAT TGACGCTGAG CGATCTCGGG CGGCACGACG AGGCCTGCAA GCTGTACGCC
GAGGCCATAG ATGTCGCCGA GGAATGCGGC GCAGCGCAGC GGGCCGGGTA CGCGCGCAGC
CAGCTGGCGT GGGTTCTGCT GCGAGTCGGC CAGGTCGACG AAGGGCTCGC GATGAGCCGC
GCCGCCCTGC GGTACGCACA GGATCAAGAA GACGCGCTGC TGCTCGGCCG GATGCAGGAC
CAGGTGGGGA TCGGCCTGGC GATGCTAGGG GCTTGGCCGG AGGCCCAGGC GGCCTGGCAG
CAGGCTGTGG AGACGCTCGA CGGCATCGGC AGCCCCGAGG CGGAGGCTGT GCGGGCGCGC
CTGCGAGCAG AACCGGAGGC TCTGCCGGTC GTCGGTCCGG ACGGAGGCCT GATCACACCG
ATACGCAGCC GGTGA
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| Protein sequence | MTTFSILGPV EVRVDGYPVS VPRPRRRAVL AYLLLHANDR VETEQLIGAL WDAEPPRTAR
AQVHSAVSAL RTGLPGTLGE GLVSQTSGYR LTVAADQLDL TLFRRLTSAA RAQMASRQFD
TAVGSLRAAL ALWRGAALAG VEAPFVEPAR TRLEEERFSA YEALADLEMA AGRHVDLVPL
LTGLLNEYPT RESLVERLAL ALYRGGRKTD ALALVRKLRT LLAEEYGLDP ERSIVELENS
MLRGDPALEH QWPAMSAQPL SRSEAGAETG AAAGARPGAS TTGAAPAAPA APTLTVPTPV
PTPVPTPAPV PVPAARTLPR PAQLPRASAG FVGRAAELSR LTRLLGSDND SPYIAVVTGP
AGVGKTALAL LWAHRQADAF PDGQLFVDLH GYDRIEAENA DSVLERFLLA LGIPGHDIPS
GLPKREDLFR SAVANRRMLL VLDNARDYQQ ISPLLPGSAL SRTVITSRAR MGSLVADTGA
LTVQLGVLPL DESVEVLARI VGPDAVAGAP DASRELARLC AGLPLALRIS AVRLLEESTA
GIAGLAAELT SEEHRLSALD LLDDGRTVSQ ALEHSHRGLS AEQGRLFRLL SRHPVGTVSA
AAAHALADHG ELRFAATHAT QRLLRALEAV YLLDQSTDGY QMHDLVRLYG RSRREPDDDA
AYGRVIDWYI SVAAAGFAVL APTQPRLPAD VTHRLTTSDA EPFDGEAAAL AWFEEQIDNL
VAVLRHAAER EEHRVVWQIA VGVSPYLLRR HRLDALVETQ RLGERAALGA DNPPAAAVLA
NNLGIAYAMR QDPQAQEPFE RAAAIHRALG DRRRAAGVMA NLGSLRYGLG MLSKAAETQR
RSLEELREFG HSQALSAALA NLGLTLSDLG RHDEACKLYA EAIDVAEECG AAQRAGYARS
QLAWVLLRVG QVDEGLAMSR AALRYAQDQE DALLLGRMQD QVGIGLAMLG AWPEAQAAWQ
QAVETLDGIG SPEAEAVRAR LRAEPEALPV VGPDGGLITP IRSR
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