Gene Caci_6515 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6515 
Symbol 
ID8337879 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp7507099 
End bp7510113 
Gene Length3015 bp 
Protein Length1004 aa 
Translation table11 
GC content71% 
IMG OID644959612 
Producttranscriptional regulator, SARP family 
Protein accessionYP_003117205 
Protein GI256395641 
COG category[T] Signal transduction mechanisms 
COG ID[COG3629] DNA-binding transcriptional activator of the SARP family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.409149 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.360927 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGACTT TTTCGATTCT CGGGCCTGTG GAGGTGCGGG TCGATGGTTA CCCGGTGAGC 
GTTCCGCGGC CGCGTCGGCG GGCCGTGCTC GCCTACCTGC TGCTGCATGC GAATGACCGG
GTGGAGACCG AACAGCTGAT CGGTGCGTTG TGGGACGCCG AACCGCCCAG AACGGCGCGG
GCACAGGTGC ATTCGGCAGT TTCGGCTCTG CGGACCGGGC TGCCGGGGAC GCTCGGCGAA
GGCCTGGTGT CGCAGACCAG TGGCTACCGG TTGACTGTCG CCGCCGATCA ACTCGACCTG
ACGCTCTTTC GCCGGCTGAC AAGCGCGGCG AGAGCGCAGA TGGCGAGCAG ACAGTTCGAC
ACCGCGGTGG GGTCGCTGCG TGCGGCCCTG GCATTGTGGC GGGGCGCGGC GTTGGCGGGG
GTGGAGGCGC CTTTCGTCGA GCCGGCGCGC ACGCGGCTGG AGGAGGAGCG GTTCAGCGCG
TATGAAGCGC TGGCCGATCT GGAGATGGCA GCGGGTCGGC ACGTGGATCT GGTGCCGTTG
CTGACCGGAT TGCTGAACGA GTACCCGACC CGGGAGTCGC TCGTGGAGCG GCTCGCCCTG
GCCCTGTACC GGGGCGGGCG GAAGACGGAT GCGCTGGCTC TCGTGCGAAA GCTGCGGACC
CTGCTCGCCG AGGAATACGG CCTCGACCCG GAGCGCAGCA TCGTGGAGCT GGAAAACTCC
ATGCTGCGAG GGGATCCGGC TCTGGAGCAT CAGTGGCCTG CGATGTCGGC ACAACCACTG
AGCCGATCCG AAGCGGGTGC CGAAACCGGT GCCGCCGCGG GCGCCAGGCC CGGGGCTTCG
ACCACCGGGG CCGCGCCGGC CGCGCCCGCC GCGCCCACGC TCACCGTCCC CACTCCGGTC
CCCACTCCGG TCCCCACTCC GGCGCCCGTT CCAGTTCCGG CCGCACGCAC CCTGCCCCGG
CCCGCCCAGC TGCCCCGCGC CAGCGCGGGC TTCGTCGGCC GCGCCGCCGA GTTGAGCCGC
CTGACCCGGC TGCTCGGCTC CGACAACGAT TCCCCCTACA TCGCCGTGGT CACCGGGCCG
GCCGGAGTCG GGAAGACTGC CCTGGCCCTG CTGTGGGCAC ACCGCCAGGC CGACGCGTTC
CCCGACGGAC AGCTCTTCGT CGACCTCCAC GGCTACGACC GCATCGAGGC CGAGAACGCC
GACAGCGTGC TGGAGCGTTT CCTGCTCGCT CTGGGCATCC CGGGGCACGA CATACCCTCG
GGGCTCCCCA AACGCGAAGA TCTGTTCCGC TCGGCGGTGG CCAACCGCCG TATGCTGCTG
GTTCTGGACA ACGCGCGGGA CTACCAGCAG ATCAGCCCTC TGCTTCCGGG TTCAGCACTC
AGCCGCACCG TCATCACCAG CCGTGCGCGC ATGGGCAGCC TCGTGGCCGA CACCGGCGCA
CTGACCGTCC AGCTCGGCGT ACTGCCGCTG GATGAATCAG TCGAAGTACT CGCGCGCATC
GTCGGGCCCG ACGCCGTTGC CGGCGCGCCC GATGCGTCGC GCGAGCTGGC GCGCCTATGC
GCAGGACTCC CCTTGGCATT GCGTATCTCG GCAGTCCGCT TGCTCGAGGA ATCCACCGCC
GGAATCGCCG GCCTCGCAGC CGAGCTGACG TCCGAAGAGC ACCGCCTTTC GGCTCTGGAT
CTGCTCGACG ACGGCCGCAC CGTCTCCCAG GCCCTGGAAC ACTCGCACCG CGGGCTCTCC
GCCGAACAGG GCCGCCTGTT CCGCCTCCTG AGCCGACACC CCGTCGGCAC CGTGAGCGCG
GCCGCAGCGC ATGCTCTCGC AGACCACGGC GAGCTGCGCT TCGCAGCGAC GCACGCCACG
CAGCGCCTGT TGCGTGCGCT GGAAGCTGTT TACCTGCTTG ACCAGAGCAC TGATGGCTAC
CAGATGCACG ACCTGGTTCG GCTGTACGGT CGCAGCCGCC GGGAACCGGA TGACGACGCC
GCGTACGGCC GCGTCATCGA CTGGTACATC AGCGTCGCCG CCGCGGGGTT CGCCGTGCTG
GCCCCGACGC AGCCGCGGCT GCCCGCCGAC GTCACACACC GGTTGACCAC CTCCGACGCG
GAGCCCTTCG ACGGCGAAGC AGCGGCCCTG GCCTGGTTCG AAGAACAGAT CGACAACCTC
GTGGCGGTGC TCAGGCACGC CGCCGAACGC GAAGAGCACC GTGTGGTGTG GCAGATCGCC
GTCGGCGTCA GCCCCTATCT GCTGCGCCGC CACCGTTTGG ACGCCCTCGT GGAAACCCAG
CGGCTCGGTG AGCGGGCAGC CCTCGGCGCG GACAACCCGC CGGCCGCCGC CGTGCTGGCG
AACAACCTCG GCATCGCGTA CGCCATGCGT CAGGACCCGC AGGCCCAGGA ACCTTTCGAG
CGGGCAGCGG CGATCCACCG CGCGCTGGGC GACCGTCGCC GAGCCGCCGG GGTCATGGCG
AACCTCGGCA GCCTGCGTTA CGGCCTCGGC ATGCTGTCGA AGGCCGCCGA GACGCAGCGC
AGGAGCCTGG AGGAGTTGCG TGAGTTCGGG CACAGCCAAG CGCTGTCCGC CGCGCTCGCC
AACCTCGGAT TGACGCTGAG CGATCTCGGG CGGCACGACG AGGCCTGCAA GCTGTACGCC
GAGGCCATAG ATGTCGCCGA GGAATGCGGC GCAGCGCAGC GGGCCGGGTA CGCGCGCAGC
CAGCTGGCGT GGGTTCTGCT GCGAGTCGGC CAGGTCGACG AAGGGCTCGC GATGAGCCGC
GCCGCCCTGC GGTACGCACA GGATCAAGAA GACGCGCTGC TGCTCGGCCG GATGCAGGAC
CAGGTGGGGA TCGGCCTGGC GATGCTAGGG GCTTGGCCGG AGGCCCAGGC GGCCTGGCAG
CAGGCTGTGG AGACGCTCGA CGGCATCGGC AGCCCCGAGG CGGAGGCTGT GCGGGCGCGC
CTGCGAGCAG AACCGGAGGC TCTGCCGGTC GTCGGTCCGG ACGGAGGCCT GATCACACCG
ATACGCAGCC GGTGA
 
Protein sequence
MTTFSILGPV EVRVDGYPVS VPRPRRRAVL AYLLLHANDR VETEQLIGAL WDAEPPRTAR 
AQVHSAVSAL RTGLPGTLGE GLVSQTSGYR LTVAADQLDL TLFRRLTSAA RAQMASRQFD
TAVGSLRAAL ALWRGAALAG VEAPFVEPAR TRLEEERFSA YEALADLEMA AGRHVDLVPL
LTGLLNEYPT RESLVERLAL ALYRGGRKTD ALALVRKLRT LLAEEYGLDP ERSIVELENS
MLRGDPALEH QWPAMSAQPL SRSEAGAETG AAAGARPGAS TTGAAPAAPA APTLTVPTPV
PTPVPTPAPV PVPAARTLPR PAQLPRASAG FVGRAAELSR LTRLLGSDND SPYIAVVTGP
AGVGKTALAL LWAHRQADAF PDGQLFVDLH GYDRIEAENA DSVLERFLLA LGIPGHDIPS
GLPKREDLFR SAVANRRMLL VLDNARDYQQ ISPLLPGSAL SRTVITSRAR MGSLVADTGA
LTVQLGVLPL DESVEVLARI VGPDAVAGAP DASRELARLC AGLPLALRIS AVRLLEESTA
GIAGLAAELT SEEHRLSALD LLDDGRTVSQ ALEHSHRGLS AEQGRLFRLL SRHPVGTVSA
AAAHALADHG ELRFAATHAT QRLLRALEAV YLLDQSTDGY QMHDLVRLYG RSRREPDDDA
AYGRVIDWYI SVAAAGFAVL APTQPRLPAD VTHRLTTSDA EPFDGEAAAL AWFEEQIDNL
VAVLRHAAER EEHRVVWQIA VGVSPYLLRR HRLDALVETQ RLGERAALGA DNPPAAAVLA
NNLGIAYAMR QDPQAQEPFE RAAAIHRALG DRRRAAGVMA NLGSLRYGLG MLSKAAETQR
RSLEELREFG HSQALSAALA NLGLTLSDLG RHDEACKLYA EAIDVAEECG AAQRAGYARS
QLAWVLLRVG QVDEGLAMSR AALRYAQDQE DALLLGRMQD QVGIGLAMLG AWPEAQAAWQ
QAVETLDGIG SPEAEAVRAR LRAEPEALPV VGPDGGLITP IRSR