| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6415 |
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| Symbol | |
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| ID | 8337778 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 7402404 |
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| End bp | 7404461 |
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| Gene Length | 2058 bp |
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| Protein Length | 685 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644959516 |
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| Product | Transketolase central region |
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| Protein accession | YP_003117110 |
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| Protein GI | 256395546 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.12568 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0992343 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGACGA CCGCCAAGTC TTCGTCGTCG TCTTCGGCAC CCCGGCGGCA GCCCGCCGAT
CCGGTGCTGG AGCGAGTGAA GGGTCCGGAG GACTTGGCGG GGCTCGATAC CGCCGAGCTG
ACCGCACTGG CCGCGGAGAT CCGCGGCTTC CTCATCGAGA AGGTGTGCGC GGTCGGCGGA
CACCTGGGCG TCAACCTCGG CGTGGTGGAG CTGACCATCG CGCTGCACCG GGCTTTCCGC
TCACCCCACG ACGTGCTGCT GTTCGACACC GGCCATCAGA GTTACGTGCA CAAGATCCTC
ACCGGACGCG GCGCGGGCTT CGACGTGCTG CGCCGGAACG GCGGACTGTC CGGCTATCCC
TCACGCTCGG AATCCGCACA CGACTGGATC GAGAACTCGC ACGCCTCGAC CGCGCTGAGC
TACGCCGACG GCCTGGCCAA GGCGTTCCAG CTGCGCGGCG AGCTGTCCGA CGGCTCCGGC
GACCCGGCGC GGCGGCACAT CGTGCCGGTG ATCGGCGACG GCGCCATGAC TGGCGGCCTC
GCCTGGGAAG GGCTCAACAA CCTCGCCGGT GCCGCCGACC GTCCGGTCGT GATCGTGCTC
AACGACAACG GTCGCGCCTA CGCCCCGACG ATCGGCGGCA TCGCCACGCA CCTCGGCGGA
CTGCGCGCCG AGCCTCGGGC TCAGCACCTG TTCACCGATC TCGGGCTGGC CTACGTCGGC
CCGGTCGACG GCCACGACAT CGCTGCGACC GAGCAGGCGC TGCGCGCGGC GGCGGCGCTC
GGCAAGCCGG CGCTGGTGCA CGTCCTCACC ACGAAGGGCC GCGGCTTCGA ACCCGCCGAG
TGCGACGAGG CGGACCGGAT GCACGCGGTC GGGGTCGTGG ACCCGCACAC CGGCGCGCCG
ATCAAGCCGC CGAAGAAGAG CTGGACCGAG GTCTTCGGCG AGCAGATGAG CGCGATCGGC
GCGGAGCGGT CCGACGTGGT GTGCGTCAGC GCGGCGATGG TGCTGCCGGT CGGGCTCGGC
GAGTTCGCGC GGCGGTTCCC GGAGCGCGTG TTCGACGTCG GCATCGCCGA GCAGCACGCG
GTGTGTTCGT CGGCGGGGTT GGCCGCCGGA GGGCTGCACC CGGTGGTGTG CGTCTACTCG
ACGTTCCTGA ACCGGGCGTT CGACCAGGTG GTCATGGACG TGGCGCTGCA CAAGGCGGGC
GTCACGTTCG TCTTGGACCG CGCCGGCGTC ACCGGACCCG ACGGCGCCTC GCACCACGGG
ATGTGGGACA GCGCGATCCT CAGCGTCGTG CCGGGCTTGC GTCTGGCGGC GCCCCGGGAC
CCGGCGCGGC TGGCGGAGCT GCTGCGAGAG GCGGTGGCGG TGGACGACGC GCCGACCGTG
ATCCGCTTCC CGAAGGCCGT GGCCGGGCCC GACATCGAGG CGCACACGCG GATGAACGGC
GTCGACATCT TGTATCGGGC TGCGGGACGG CCGCTGGACG TGTTGATCGT GGCCGCCGGC
GTGACGGCGA GCACATGCCT GGCCGCCGCC GAGGAGCTGG ACCGGCTGGG GATCGGCACG
ACGGTGGTCG ACCCGCGCTG GATCCTGCCG GTCAATCCGC ATCTGACGCA CTTGGCGGAC
CGGCACCGGT TGGTGGTGAC CGTCGAGGAC AGCGTGCGCA GCGCCGGGAT GGGGACGGCG
TTGGCGCAAG CCTGCGCCGA TGCGGAGTCG ACAACGCCGG TGCGGGTGAT GGGACTGCCA
CAGGAGTTCT TGGCCGCGGG TGGTCGCGAA GAAATTTTGG AAGGCGCGGG GATGGGGGTG
GGGGACGTCG TCGCGACAGT GGTGGACGGG TTGCAGGCTG GGCCTCGGAT CGCTTTGGAG
GCTGTTCCGG AGTTGTTGGA GATCCCTGAG GTATCGCAGG TCGCTGAGAC AGCACAGATC
CCTGGCACAG CACCGATTTC CGATGTAACG CAGCCCCCTG GAACGACAAC GCAGCTCCCT
GAGACAACAC AGCTCATCAC CACCGTCCGC ACCACGAACG GCGAGGCGAG GCAGGCCCGG
TCGAGCCCCC GACACTGA
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| Protein sequence | MRTTAKSSSS SSAPRRQPAD PVLERVKGPE DLAGLDTAEL TALAAEIRGF LIEKVCAVGG
HLGVNLGVVE LTIALHRAFR SPHDVLLFDT GHQSYVHKIL TGRGAGFDVL RRNGGLSGYP
SRSESAHDWI ENSHASTALS YADGLAKAFQ LRGELSDGSG DPARRHIVPV IGDGAMTGGL
AWEGLNNLAG AADRPVVIVL NDNGRAYAPT IGGIATHLGG LRAEPRAQHL FTDLGLAYVG
PVDGHDIAAT EQALRAAAAL GKPALVHVLT TKGRGFEPAE CDEADRMHAV GVVDPHTGAP
IKPPKKSWTE VFGEQMSAIG AERSDVVCVS AAMVLPVGLG EFARRFPERV FDVGIAEQHA
VCSSAGLAAG GLHPVVCVYS TFLNRAFDQV VMDVALHKAG VTFVLDRAGV TGPDGASHHG
MWDSAILSVV PGLRLAAPRD PARLAELLRE AVAVDDAPTV IRFPKAVAGP DIEAHTRMNG
VDILYRAAGR PLDVLIVAAG VTASTCLAAA EELDRLGIGT TVVDPRWILP VNPHLTHLAD
RHRLVVTVED SVRSAGMGTA LAQACADAES TTPVRVMGLP QEFLAAGGRE EILEGAGMGV
GDVVATVVDG LQAGPRIALE AVPELLEIPE VSQVAETAQI PGTAPISDVT QPPGTTTQLP
ETTQLITTVR TTNGEARQAR SSPRH
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