| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6407 |
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| Symbol | |
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| ID | 8337770 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 7378952 |
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| End bp | 7385536 |
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| Gene Length | 6585 bp |
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| Protein Length | 2194 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644959508 |
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| Product | YD repeat protein |
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| Protein accession | YP_003117102 |
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| Protein GI | 256395538 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.524494 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGGGA CGAAACGCGC CGGGCGGGCT CAAAAGCGGG TCCGGCACCG GATCCGGGCG
GCCGGGCTGA CCGCCGCCGT GCTGGTCGCA CAGCTGGCGC TGGGCGGTGG GGGAGCGGTG
GCACAGGCCG CTGCTTCCGG CGGGCACGGC GGCGTCAACG TCGCGGCGCC GACCCGGGAC
AAGCCGGCGT CGGTGCAGCT GGTGACCCCG CACGCGGTCG CGCCGAAGGC GATGGCGAAG
GCTCCCGCGC CGGCGACGGC GTGGCCGGCC GCCGGGAGCG CCGAGGCCCG CCTCGCCGCG
CCGGCGTTCG GGAATCAGAA CGCGAATACG CACTTCGCCG TCGCCGAGGC GCCGATGGCA
CAGGCCGGCG CGCTTCCGGT GTGGGTGGGG TCGGCGGCAC CGGGCGGCGC GGCTCCCGAC
GCGCAGGTGC GGCTGTACTC CCGGGACGCG GCGACGGCGG CCGGCGTGCC CGGATTGCTG
TTGTCGGTGG CCCGATCCGA CGGCGCGGCC GCGGCGAAAA CGACGGCAGC CGCGACGACG
GCGACTGTGC CGGCACGCGT CGCGGTCGAC TACACCGGCT TCGCCGACGC CTACGGCGGC
GGCTGGTCGA ACCGCTTGAA ACTGGTCGCC ATGCCGGACT GCGCGCTGAC CACGCCGCAG
CTTCCCGCCT GTCGCACCAC GACCCCGCTG GCGTCGGTCG ACGACACCGC GGCCCACCGG
GTGACGGCCT CGGTGCCGTT GGCGGCGGGC GCGCAGGTGC TGGCGCTCAC GTCGACGTCC
TCGGACTCGG GCGGTACCTA CACCGCGACC TCGCTCCAGA CGACCGGCAG CTGGACGGCC
GGCGGCTCCA GCGGCGCGTT CGACTACTCC TACCCGATGG CGGTGCCGAA CGTGCCCGGC
GGGCTGAGCC CCGCCGTGTC GCTGTCCTAC GATTCGCAGA GCGTTGACGG CCGCACCTCC
GCCACCAACA GCCAGGCGTC CTGGGCCGGC GACGGCTGGG ACTACTCGCC GGGCTTCATC
GAGCGCTCCT TCGCCAGCTG CGCGGACAAC CCCGCCGGCG CGACCAAGAC CGGCGACACG
TGCTGGTCGG CGAACGACAC CTACACGATG TCGCTGGGCG GCCGGTCCAC GCAGCTGGTG
GACGACCCGG TGAAGGGCTG GCACGGCCAG GACGACGCGG GCGACCGCGT CCAGCTGCTG
ACCGGCGCCG TCAACGGCGA CCACGCGGGC CAGTACTGGG TGGTCACCGA GCCGAGCGGC
ACCCAGTACT ACTTCGGGCA GAACCGGCTC AAGGGCTGGG CCGGAAGCGA CGCGACCACC
GCCTCGACGT TCACCGAGCC GGTCTACTTC CCCTCGACGC CGCCGGATTC GGACCCGGAC
GCCGCGTGCT ACAACGCCAC GTTCTCCAGC TCCTGGTGCA CGCTGGCCTA CCGCTGGAGC
CTGGACTACG TCGTCGACAC GCACAAGGAC GCGATCGCGT ACTTCTACAA CCAGGAGACG
AACCACTACT CGCCGGACAA CGGATCCAAG GCGACGGCCG GGTCGCTGTA CACCCGCGCC
GGGACGCTGA CGAAGGCGCT CTACGGCTTC CGCGACGGCC AGGTGTACTC CGCCTCCCCG
CAGCCGGCCG CCGAAGTGCT GTTCGGCGAG AACGGGCGCT GCGACACCGC CGCGACCGGC
TGCGCCACCT CCACGCTGAG CTCGACGACC GCCGGGAACT GGCCGGACGT CCCGTTCGAC
CAGCAGTGTG CGTCCGACAC GGCGTGCTCG ACCATCAGCC CGACGTTCTG GACCGAGAAC
GAACTGACCT CGGTGCAGAC GAAGATCCTG GTCGGGACCG GGTACCAGAA CGTCGACCTG
TGGCAGCCCG AGTACGCGTT CCCGGCGACC GGCGACAGCA CGCCGCGCGC GCTGTGGCTG
TCCTCGATCA CCCACACCGG GCAGGACACG CTCGGCGGGC TTCCCGGCGG AGCCACGCCG
ACCGCGCCGC CGCTGCCGCC CACCGTCTTC ACCGGGCTGC GGCTGGCGAA CCGGGTCCAT
GTCACCGACG GATACGAGCC GATCACCCGG TACCGGATGA CCGGGGTCAC CAGCGAATCC
GGCGCGGTGG TCAGCGTCGA CTATCAGGGT GCTTCCTGTA CCGGCGGCAC TCCGGCCGTC
GATGCCAACA CGACGCTTTG CTATCCGCAG TACTGGACAC CGCCATTGGC GTCCACGCCG
ATCCTGGACT GGTTCAACAA ATACGTCGTG CACGACGTGT CCACCACGGA CCCGGCCGGC
GGCGCGCAGC CGCTCTACGT GCAGTACGCC TACGGCAACG GAGCCTGGCA CTTCGACGAC
AACCCGCTGA CCCAGGCGAA GTACCGGACC TGGGACATGT GGCGCGGGAC GGCCACGGTG
ACCGCCGACA CCGGGCAGGC CTCCGACTCC AGCCCGATCT CCGAGACGGT GGCCGGCTAT
ATGCAGGGCA TGGATCAGGA CCCGAACTCC TCCGGAGGCA AGACCTCGGC GAGTGTGAAG
GACTCGCGCG GCGAGGTCGT CACGGACTCT GATTGGCTTG TCGGGCAACA GCGGGAGAAG
ATCGTCCGCA ACGGCGTCAA CGGGCCCGCG ATCTCCGACG ACATCACCGA CATGTGGGCG
CAGCGGACCG CCTCGCAGTC CCGGCCCGGC ACGGGTCTGG ACGCGGTGGT CGCCTACCAG
GTGGCCATGG CCGCCACCCG CGGCTACGCC CCGACCTCGA CCGGGGGCAC GCGCGCCACC
GAGTCCGACT ACACCTACGA CGGCTACGGC CGGGTCACCG CCGTCAGCAG CCTCGGGGAC
ACCTCCACCG GCGCCGACGA CAGCTGCACC CGGACCGCCT ACGCGCAGGA CACCAGCCGG
TGGCTGCTGG ACCTGCCCTC GCGGGTGTCC ACGCTGAACG TGGCGTGCAC GGCCACGCCG
TCGTATCCGG CGAACCTGGT CACCGACACG CAGAACCTGT ACGACCTGTC CGCCACGGTC
GGCACGGCGA ACGGGTCCGG CGACATCACG ACCAGTCAGA AGGCTGACAC GGTCGCCGCC
TCCGGCGTGC CGCACTACGC GACCCAGGCC ACGACGACCG TCGACGAGTA CGGCCGTCCC
ACCTCCTCCA CCGACGGGCT CGGCCGCGTC ACCACCACCT CCTACACGCC GGCCACCGGC
GCGGCGCCGA CCTCGGTCAC CACGACCGCG CCGACCCCGG CCGGGCAGAC CTCGGCGTTC
ACCACGACCA AGACCTACGA CCCGGCGCGC GGCCTGCAAC TGACCGCCAC CGACGCGGCC
GGGCACAAGG GGTATCAAAC CTATGATCCG CTGGGCAGGC TCACGGCGTC CTGGGCGGCG
CAGACCAACG CGACGCCGAC CACGACCCTG CCGAACGCCA AGTTCACGTA TCAGGTCTCG
AACGGCACGA CCCCTTCGGT GGTCACGACG TCCCTGCTCA ACGACGCGGG CACCGGATAC
CAGGCTTCTG AGACGCTCTA CGACTCGCTG ATGCGCCAGC GCGAGACCCA GTCCCCGACG
CCGGACGGGA ACCGCGTCGT CGCCGACACC ACCTACGACT CGCACGGCCG CAAACTGCTG
ACGACCGACG GGTACTACGC CACCGGCGCC GTCGGCCCGG CGCTCGTGAA AGCGGCCCAG
GGCACGATCC TGACCCAGAA CGGGTTCGCG TACGACGGTG CGGACCGCCA GCTCAAGGAC
ATCACCTACT ACGCGGCGAG CGAGAAGTGG GAGAACGACA CCACGTACAA CGGAGTCGAC
GAGACCACCA GCACCCCGCC GGGCGGCGCC GGCGGGGACA CCGCCGCCTC CACCTACACC
GACGCGCTCG GCCACACCGT GAAGGTGGTC CAGTACAACG GTTCCAGCTC GACCGACCCG
GTCGCCACCA CGACCAGCTA CGGCTACACC CGGGACGGCA AGACGGCGTC GGTCGCCGAC
ACCTCCGGGG ACACCTGGAC CTACGGCTAC AACCTGCTCG GCGAGCAGGT CAGCCAGAGC
GACCCGGACA CCGCCGGCTC CACGTTCACC TACGACGCCG CCGGGCAGCA GATCACCGCG
ACCGACGCCC GAGGCAAGCA GGTCACCACG GCGTACGACG CGCTCGGGCG CAAGACCGCC
ACGTACGACA CGACCGGAGG CGCCACGCCT GCGGCCGGCA ACAAGACCGC GTCCTGGACG
TACGACACCC TCGCCAAGGG CTACCCGACG TCTTCGACCA CGTATGACAA CGGCTCCGCG
TACATCTCCA CCGTGCTCGG ATACACCACC TTGGGGCAGT CCAAGGGGAC GGCCGTGGTC
ATTCCGGCGG CTGAAGGGAA GCTCGCGGGC ACCTACGTGC AGCAGTTCAC TTATACGGCC
GCGGGCCGCA ACGCCACCAC GACGGACAGC GCGGACGGCG GGCTGCCGGC GGAAACCATC
AGCACGCAGT ACGACGCGCT CGGCCAGCCC TACAGCCTGA CCGGCACCAA CACCACCTAC
GTGGCGGACC TGACGACCGA CCAGTTCGGC AAGCCGTCCA TCTTCACCTT CGGCGCGAGT
TCCAACAGCG CCTACCTCGA CCTCACCTAC GACCCGATGA CCGGCCGGCT GGCGACCGCC
GCCACGGTGG CGACGATCAA CAGCTCCAGC CGTACCGTCG ACGACACCAC GTACGGCTAC
AACCAGGCGA CGGGCAATGT CACGTCGGTG TCGGACCTGC AGAACGAGAC CGGGGTCCAG
GTGACCGACA CCCAGTGCTT CGGCTACGAC GGGCTGCAGC GCCTCACCGC GGCGTGGACC
GCGACCGACA GGTGCGCCGC CACTCCGAAG GCGGGCAGCT CCGCCACGGT CGGCGGGCCG
AACCCGTACT GGCAGACGTT CGGCTACGAC GCGCTGGGCG ACCGTGTCTC AGAGGTCGAC
CACAACACCG CCGGTGTCAC CGCCGAGGAC GTCAGCACCG GCTACGCCTA CCCGGCCGCC
GGCGCCGGCG CGACCCGGCC CAACGCGCTG AGCAGCACCA CGACCACCGG ACCGACCGGT
TCGGTGAGCG CGCAGTTCGG CTACGACCAG GCCGGCGACA CCGTCTCCAT CACCGACCCG
GTCCACGGCG ACCACACGCT GGCCTGGTCC GACTCCGGCA AGCTCCAGTC CGACACCACC
GCCGGCGGGA CCAGCGGCTA TGTCTACGAC GCGGACGGCA ACCTGCTGAT CCGCCACGAC
CCGGGCACCG GCACGCTGTT CCTGGGGGAC GAGCAGATCA CCGGCACGTC CACCGCGGTG
AGCCAGGCGG TGCGCTACTA CAGCATCGGC GGGCAGACGG TGGCGGCTCG TACGGCGACC
GCGGGCGGCG CGACCCAGGA CGTCCAGTAC CTGATGCCGG ATCGGCAGGG TACTGATGTT
CTGGCCCTAG ACTCGGTCAC CCAGGCCGTC ACCCGCCGCG AGTTCACGCC GTACGGCGGC
GGGCGCGGTC CGGCTCCGGC CGCGTGGCCC GGCGGCGACC GCGGCTACGT CGGCGGCGCG
CCGGACCCGA CCACCGGCAT CGAGACGCTC GGCGCCCGGC AGTACGACCC GGTCACCGGC
CGCTTCCTGT CCACCGACCC CATCCTGGAG GCCAACGATC CCAGCCAGAT GGGCGGCTAC
AGCTACGCCG CCGACAACCC GGTCACCGAC TCGGACCCCA CCGGCAAGCG GGTCGAGGAC
CCCGGCACCG GCTGCAACGG CGACGCCGCG ACGGTGCAAC AGTGCATCGC CGGCATGCCC
CGCATGCAGA AGTCCTCGAC CGACACCCAC ACTCCCGGAA CGACCACCAC CGACCACGGA
GGCAGCACCA ACGGCGGGAG CGACGGCGCG TCAGACCCGG GCTCCTGCTC CAACCAGTCC
TGCTACCTCG ACTACGTCAA CCCCTCCTAT GCCGCAGCCG AGTCCGCCGC CCGCGCCGCG
ATGCTCAGCG CCGAAGCGGC CGCCGACCTC GCCCGCGAAC AAGCGGCCGC CGCGGCTGCC
GCCGCCGCCG CGAAGGCCAA GCACCACTGC GGGCTGAACC CGTTCTCGTG GGGCACGTGC
CTCAGCGATG TCGCTGGGGC GAGTGCGGGG GCGGTCTCGA CGGCTTCCCG GGACGTGTTG
AACCCGGACT GTCCGAGCGG CGCCGGCCAC ATCACGTGCG AGAACCAGAA TTGGGACTTC
GAAGGGAGCG GGGCCTGGTT CAAAAAAGAG TTCCTCTCCC GGGATGGGTG GGAAGGACAC
GGCGAGTGGT TCGAGGGCGT CAGCGCCAAG TTCGGGTTCA CCTCTGTCGT GGCCTATGCC
GGGGCAATGG CCGGAGTGGA AACCGGTGAG GGCGACCTGG GACCGGCGGG CATCGGAGCG
GCCGCGTCGT ACGCGTCGAC GGCGACCGCG GGCATGGCAG CCCTCTCCTT CGCCCTCGCC
GGCAAGCCCG AAGAGACGAA CAAGGCGCTC GGATCCTTCG CGATCGGAGT GGGAGGCGGC
CCCGCGGGCG GTATCGCGAT AGTCGTGCAG AGATTCGGAA TCCCGGAGGT AGTCGGAGAG
GCCGGTGAGT CGGTTGTTCA CTTGGCTTGG CATCTGATTC CCTGA
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| Protein sequence | MAGTKRAGRA QKRVRHRIRA AGLTAAVLVA QLALGGGGAV AQAAASGGHG GVNVAAPTRD
KPASVQLVTP HAVAPKAMAK APAPATAWPA AGSAEARLAA PAFGNQNANT HFAVAEAPMA
QAGALPVWVG SAAPGGAAPD AQVRLYSRDA ATAAGVPGLL LSVARSDGAA AAKTTAAATT
ATVPARVAVD YTGFADAYGG GWSNRLKLVA MPDCALTTPQ LPACRTTTPL ASVDDTAAHR
VTASVPLAAG AQVLALTSTS SDSGGTYTAT SLQTTGSWTA GGSSGAFDYS YPMAVPNVPG
GLSPAVSLSY DSQSVDGRTS ATNSQASWAG DGWDYSPGFI ERSFASCADN PAGATKTGDT
CWSANDTYTM SLGGRSTQLV DDPVKGWHGQ DDAGDRVQLL TGAVNGDHAG QYWVVTEPSG
TQYYFGQNRL KGWAGSDATT ASTFTEPVYF PSTPPDSDPD AACYNATFSS SWCTLAYRWS
LDYVVDTHKD AIAYFYNQET NHYSPDNGSK ATAGSLYTRA GTLTKALYGF RDGQVYSASP
QPAAEVLFGE NGRCDTAATG CATSTLSSTT AGNWPDVPFD QQCASDTACS TISPTFWTEN
ELTSVQTKIL VGTGYQNVDL WQPEYAFPAT GDSTPRALWL SSITHTGQDT LGGLPGGATP
TAPPLPPTVF TGLRLANRVH VTDGYEPITR YRMTGVTSES GAVVSVDYQG ASCTGGTPAV
DANTTLCYPQ YWTPPLASTP ILDWFNKYVV HDVSTTDPAG GAQPLYVQYA YGNGAWHFDD
NPLTQAKYRT WDMWRGTATV TADTGQASDS SPISETVAGY MQGMDQDPNS SGGKTSASVK
DSRGEVVTDS DWLVGQQREK IVRNGVNGPA ISDDITDMWA QRTASQSRPG TGLDAVVAYQ
VAMAATRGYA PTSTGGTRAT ESDYTYDGYG RVTAVSSLGD TSTGADDSCT RTAYAQDTSR
WLLDLPSRVS TLNVACTATP SYPANLVTDT QNLYDLSATV GTANGSGDIT TSQKADTVAA
SGVPHYATQA TTTVDEYGRP TSSTDGLGRV TTTSYTPATG AAPTSVTTTA PTPAGQTSAF
TTTKTYDPAR GLQLTATDAA GHKGYQTYDP LGRLTASWAA QTNATPTTTL PNAKFTYQVS
NGTTPSVVTT SLLNDAGTGY QASETLYDSL MRQRETQSPT PDGNRVVADT TYDSHGRKLL
TTDGYYATGA VGPALVKAAQ GTILTQNGFA YDGADRQLKD ITYYAASEKW ENDTTYNGVD
ETTSTPPGGA GGDTAASTYT DALGHTVKVV QYNGSSSTDP VATTTSYGYT RDGKTASVAD
TSGDTWTYGY NLLGEQVSQS DPDTAGSTFT YDAAGQQITA TDARGKQVTT AYDALGRKTA
TYDTTGGATP AAGNKTASWT YDTLAKGYPT SSTTYDNGSA YISTVLGYTT LGQSKGTAVV
IPAAEGKLAG TYVQQFTYTA AGRNATTTDS ADGGLPAETI STQYDALGQP YSLTGTNTTY
VADLTTDQFG KPSIFTFGAS SNSAYLDLTY DPMTGRLATA ATVATINSSS RTVDDTTYGY
NQATGNVTSV SDLQNETGVQ VTDTQCFGYD GLQRLTAAWT ATDRCAATPK AGSSATVGGP
NPYWQTFGYD ALGDRVSEVD HNTAGVTAED VSTGYAYPAA GAGATRPNAL SSTTTTGPTG
SVSAQFGYDQ AGDTVSITDP VHGDHTLAWS DSGKLQSDTT AGGTSGYVYD ADGNLLIRHD
PGTGTLFLGD EQITGTSTAV SQAVRYYSIG GQTVAARTAT AGGATQDVQY LMPDRQGTDV
LALDSVTQAV TRREFTPYGG GRGPAPAAWP GGDRGYVGGA PDPTTGIETL GARQYDPVTG
RFLSTDPILE ANDPSQMGGY SYAADNPVTD SDPTGKRVED PGTGCNGDAA TVQQCIAGMP
RMQKSSTDTH TPGTTTTDHG GSTNGGSDGA SDPGSCSNQS CYLDYVNPSY AAAESAARAA
MLSAEAAADL AREQAAAAAA AAAAKAKHHC GLNPFSWGTC LSDVAGASAG AVSTASRDVL
NPDCPSGAGH ITCENQNWDF EGSGAWFKKE FLSRDGWEGH GEWFEGVSAK FGFTSVVAYA
GAMAGVETGE GDLGPAGIGA AASYASTATA GMAALSFALA GKPEETNKAL GSFAIGVGGG
PAGGIAIVVQ RFGIPEVVGE AGESVVHLAW HLIP
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