Gene Caci_6383 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6383 
Symbol 
ID8337746 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp7346566 
End bp7347150 
Gene Length585 bp 
Protein Length194 aa 
Translation table11 
GC content71% 
IMG OID644959484 
ProductCarboxymuconolactone decarboxylase 
Protein accessionYP_003117078 
Protein GI256395514 
COG category[S] Function unknown 
COG ID[COG2128] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00778] alkylhydroperoxidase AhpD family core domain
[TIGR01926] uncharacterized peroxidase-related enzyme 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.417481 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.00344136 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGTCCCACA TCGAACTCGG CGTCGACGAG ACGCTCTTCC CAGGGATCAG CGGCCCGATG 
CTGTTCCGCC CCCAGACCGC CGCTCCCATG AGCGATCTGG TCGAAGTCCT GCTGCGCGGG
GAGAACACGC TCAGCCGCGG CGAGCGCGAA CTGATCGCCG CGTACGTCTC CAGCAAGAAC
GACTGCGAAT TCTGCACCGA CTCCCACTCG GCGTTCGCCG CGGCGCAACT GGACGAGGGC
ATGCCCCTGG TCCTGCGGGT CCGCGCCGAC CCCGACGAAG CCCCGATCAC GCCGAAGCTC
GCCGCCCTGC TGCGGATCGC CGGAGCGGTG GCCAAGAGCG GCCGCGAAGT GACCACCGAG
CTGGTCGGCA CCGCGCGCGC CCAAGGCGCC ACCGACGAGG AGATCCACGA CACGGTGCTG
ATCGCGGCGG CCTTCTGCAT GTACAACCGC TACGTCGACG GCCTGGGCAC CCTGCCCGCC
GGCCGGGCCG AGGACTACCA GGCCGCGGCG GAAGCCGTGG TGGCCAACGG CTATCTGCCG
CTGGCGGGAA GGGCGCCGTC GGCGTTGAAC GTCGCAGCCT CCTGA
 
Protein sequence
MSHIELGVDE TLFPGISGPM LFRPQTAAPM SDLVEVLLRG ENTLSRGERE LIAAYVSSKN 
DCEFCTDSHS AFAAAQLDEG MPLVLRVRAD PDEAPITPKL AALLRIAGAV AKSGREVTTE
LVGTARAQGA TDEEIHDTVL IAAAFCMYNR YVDGLGTLPA GRAEDYQAAA EAVVANGYLP
LAGRAPSALN VAAS