| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6348 |
|---|
| Symbol | |
|---|
| ID | 8337711 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 7296711 |
|---|
| End bp | 7297913 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644959449 |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_003117043 |
|---|
| Protein GI | 256395479 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00107036 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00103053 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCGC TCTACCGAGC CGCCTACCAC CACGGCGACG CCCGCGCCGC GCTCACCCAG
GCCGCCTTCG ACCTGGCGCG CGGCGGCGGG CCGCCCCGAG TGACCCTGCG AGCCGCCGCC
CGCGAGATCG GCATCACGGC GGCCGCGGTC TACCGGCACT TCGCCACCGT CGAGGAACTC
CTCGAGGCGG TGAAGGGCCG GGCTTCGCGC GTGCTGGCCG ACCAGCTGGA CGAGGCACTG
GCGGCGGTCG GGGGCGATCC CGACCGGCGG GGCGAGCACG AGCGCGAGCA CGAGCAGCAG
AACGAGTACG AGCACGACCA CGACCACGCG CCCGACCACG ACCACGAGCC CGACCGTCAC
AGCGAGCACG ACCGCCGACA CGACCACGAC TCCGACCCCT GGCTCGACCA CGCGCCCGAC
TGCCACAGCG AGCACCAGCT CGACCCCGAC CCCGACCCCG ATCCCGACCA CGACAGCGAT
CCCGACCACC GGCTTGACCC CGATCCCGAC CGCCGCGGCG ATCCGGACCG CCAGCTTGAC
CCCGATCCCG ACCACCACGG CGAGCCCGAC CGCCAGCTCG ACCCCGACCT CGGCCACCAC
AGCGATCCCG ACCGCCGGCT CGACCACCAC AGCGATCCCG ACCGCCGGCT CGACCACCAC
AGCGACCCCG ACCCCGACCA CCACGGCGAG CCCGACCGCC GGCTCGACCC CGACCCCCAC
CCCGACCCCG ACCCCCACCC CGACCCCCAC CCCGACCCCG ACCCCCACCC CGACCCCGAC
CGATACCGCG AGCGCGATCA CGAGCACGAG CGTGATCGCC CCCGCGGTAT CGGCCATCAC
CGCGATCCCG ATCCGTGTCG GGACCGCGGC CTTACCGCAT CCGCCATCGG CGCGGGCGCC
GGCGAACCAG CCGTCCGCTC CCGTGCCCCG ACCCGCACCC CGTCCCCCGA CCCCACTCGG
ATCCGCGCTA TCGCAGAGGC CTACCTCTGC TTCGCGCGCG AGCACCCCGG TCTGTTCGGC
ATGGCTTGCC ACGGCGGCGT CGACGCCGTC CGTGAGCTGG TCGCCGAGCG GGTCGGGGAT
GTTCCGCGCC CGACCGCTCT GGCCGTGTGG TCCGCCGCTC ACGGTGTGGC CGTGCTCAGC
GTGCCGGAGG CCGACCAACA GCAAGTGCTG GACATCGTTC TCGCCGGAAT CGTCTCGATC
TAG
|
|---|
| Protein sequence | MTALYRAAYH HGDARAALTQ AAFDLARGGG PPRVTLRAAA REIGITAAAV YRHFATVEEL
LEAVKGRASR VLADQLDEAL AAVGGDPDRR GEHEREHEQQ NEYEHDHDHA PDHDHEPDRH
SEHDRRHDHD SDPWLDHAPD CHSEHQLDPD PDPDPDHDSD PDHRLDPDPD RRGDPDRQLD
PDPDHHGEPD RQLDPDLGHH SDPDRRLDHH SDPDRRLDHH SDPDPDHHGE PDRRLDPDPH
PDPDPHPDPH PDPDPHPDPD RYRERDHEHE RDRPRGIGHH RDPDPCRDRG LTASAIGAGA
GEPAVRSRAP TRTPSPDPTR IRAIAEAYLC FAREHPGLFG MACHGGVDAV RELVAERVGD
VPRPTALAVW SAAHGVAVLS VPEADQQQVL DIVLAGIVSI
|
|---|
| |