| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6269 |
|---|
| Symbol | |
|---|
| ID | 8337632 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 7210853 |
|---|
| End bp | 7212058 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644959370 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_003116964 |
|---|
| Protein GI | 256395400 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0836078 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGTTC TCGTTCTCGG CGGAGACGGA TTCTGCGGCT GGCCGACCGC ACTGCACCTG
TCCGACCGCG GCCACGACGT CACCGTCGTG GACAACCTCA GCCGGCGCGC CATCGACCTC
GAGCTCGAAG TCGACTCGCT CACCCCGATC CGCCCGATCG GCGAGCGGAT CCGCGCCTGG
AAGGCGGTCT CGGGCCGCGA CATCGGCTTC GTCCGCCTGG ACCTGGCGAC CGAGTACGAG
CGCCTGACCG CGGTGCTGGC CGAGCTGCGC CCGCAGGCGA TCGTGCACTT CGCCGAGCAG
CGGGCGGCGC CGTACTCGAT GCGCTCGCCG CAGGCCAAGT GCTACACCGT CGACAACAAC
GTGCGCGCCA CCCACAACCT GCTCACCGCG CTGGTCACCA CCGGCCTGGA CGCGGCGGTG
GTGCACCTGG GGACGATGGG CGTCTACGGC TACGGCTGGT CGGGATCCGC GCCGATCCCG
GAGGGCTACC TGACCGTCAA GGTACCGACC CCCGACGGGG ACATCCCGCG GGAGATCCTG
CACCCGGCGA ACCCCGGCTC GGTGTACCAC CTGACCAAGA CGCTGGACCA GCTGATGTTC
GCCTTCTACG CCAAGAACGA CCAGCTGCGC ATCACCGATC TGCACCAGGG GATCGTCTGG
GGGACGCAGA CCCCGCAGAC GATCCGCGAC GAGCGGCTGG TCAACCGGTT CGACTACGAC
GGCGACTACG GCACGGTCCT GAACCGCTTC CTGATGCAGG CCGCGATCGG GCATCCGCTG
ACCGTGCACG GCAGCGGCGG GCAGACCCGC GCCTTCATCC ACATCCGGGA CACCGTGCGC
TGTATCGAGC TGGCGATCCA GAACCCGCCG ACCGGCGCCC AGCCGCGGGT GTTCAACCAG
GTCACCGAGA CCTACCGCGT GTCCGATCTG GCGAAGCTGG TCAGCGAGAT GACCGGGGTC
GAGGTCGCGC ATCTGCCCAA CCCGCGGCAG GAGGCCGACC GCAACGAGCT GAACGTGTGC
AACGACCAGT TCCTGGCGCT GGGTCTACAG CCCACGACGC TGTCCGAGGG TCTGCTCGAG
GAGTGCACCG ACATCGCGGC GCGGTACCGG CACCGCGTGG ACCCGAGCAA GATCGTCGCC
CGCTCGGTGT GGCGGGCCGG GATGCCCACG TCGGAGGACT TGATGCCCGA GCCTGCGGAC
CGCTGA
|
|---|
| Protein sequence | MDVLVLGGDG FCGWPTALHL SDRGHDVTVV DNLSRRAIDL ELEVDSLTPI RPIGERIRAW
KAVSGRDIGF VRLDLATEYE RLTAVLAELR PQAIVHFAEQ RAAPYSMRSP QAKCYTVDNN
VRATHNLLTA LVTTGLDAAV VHLGTMGVYG YGWSGSAPIP EGYLTVKVPT PDGDIPREIL
HPANPGSVYH LTKTLDQLMF AFYAKNDQLR ITDLHQGIVW GTQTPQTIRD ERLVNRFDYD
GDYGTVLNRF LMQAAIGHPL TVHGSGGQTR AFIHIRDTVR CIELAIQNPP TGAQPRVFNQ
VTETYRVSDL AKLVSEMTGV EVAHLPNPRQ EADRNELNVC NDQFLALGLQ PTTLSEGLLE
ECTDIAARYR HRVDPSKIVA RSVWRAGMPT SEDLMPEPAD R
|
|---|
| |