Gene Caci_6173 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6173 
Symbol 
ID8337536 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp7103082 
End bp7104398 
Gene Length1317 bp 
Protein Length438 aa 
Translation table11 
GC content69% 
IMG OID644959274 
Productmajor facilitator superfamily MFS_1 
Protein accessionYP_003116868 
Protein GI256395304 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG2223] Nitrate/nitrite transporter 
TIGRFAM ID[TIGR00886] nitrite extrusion protein (nitrite facilitator) 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGTAA TCACTACCGA ACAGACCCTG TCGGACAAGG CTCTGCTGGA CGCCTGGAAC 
CCTGAGGACG AGGAGCTCTG GGCAGTCGGC GCCCGCCGCA TCGCCCGCCG CAACCTCGCG
CTGTCGATCC TGTCCGAGCA CATCGGCTTC TCGGTGTGGT CGCTGTGGTC GGTGCTGGTG
CTGTTCCTCG GCCCGGGCTA TCACGTCGAC GCCGCCGGGA AGTTCCTGCT CACCTCGGTG
CCCACGCTGG TGGGCTCGGT GCTGCGGCTG CCGTACAGCT TCGCCGTCAC CCGCTTCGGG
GGACGGAACT GGACGGTCTT CAGTGCCCTG ATTCTCCTGA TCCCCTGTGC CCTGGCGGCC
TTCCTGGTCA AACCGGGGGT GTCGTACTCG ACGCTGCTGG TGCTGGCGGC GATCACCGGC
ATCGGCGGCG GGAACTTCGC CTCCTCGATG ACGAACATCA ACGCCTTCTA CCCCGACCGG
CTCAAGGGCT GGGCGCTGGG GCTCAACGCC GGCGGCGGGA ACGTCGGGGT CGCCGCCGTG
CAGCTGGTCG GGCTGGCGGT GCTGGCCTGG AGCGGCAAGG GGCATCCGGG ACTGGTCGCC
GGGATCTACC TGCCGCTGAT CGTGGTGGCC GCGGCGGGAT CGGCGCTGTA CATGGACAAC
CTGCCGAACC GGCGTGCGGA GAAGGGCGCG ATCCGCCAGG TGGCCAAGCG CGGCACGACG
TGGGCCGTGT CAGTGCTCTA CATCGGGACC TTCGGGTCGT TCATCGGCTT CGGCTTCGCC
TTCGGGCAGG TGTTGCAGGT GCAGTTCAAG AGCGAGTTCG CCACTCCCGT GGACGCCGCG
TACCTGACCT TCCTCGGTCC GCTGCTCGGT TCGCTGTCGC GGCCGATCGG GGGACGGCTG
GCCGACCGGC TCGGCGGGGC GCGGGTCACG CTGGTCACGT TCGCCTTGAT GGCGGCGGGC
GCGGGTGTCG TGCTGGCCGC GTCCCACGCC GGTTCGCTGC CGGCGTTCGT GACCGGGTTC
GTGCTGCTGT TCGTGTTCAG CGGGATCGGC AACGGCTCGG TGTACAAGAT GATCCCGGCG
CTGTTCGCCG GGGAGGCCGA CGCCGACGCC CGGCGGCTGA GCGGGGCGCT GATCGGGCTG
GCCGGAGCCG TTGGGGCATT CGGGGGAGTG CTGGTCAACA TGGCCTTCCG GCAGTCGTTC
CTCAGTACGA AGAACGGGAA CGCGGCGTAC TGGACGTTCC TGCTGTTCTA CGCGCTGTGT
GCGGCGCTGA CGTGGGCGGT GTTCATGCGT CGGGGGGCGG GTCGGACTCG CGGATGA
 
Protein sequence
MSVITTEQTL SDKALLDAWN PEDEELWAVG ARRIARRNLA LSILSEHIGF SVWSLWSVLV 
LFLGPGYHVD AAGKFLLTSV PTLVGSVLRL PYSFAVTRFG GRNWTVFSAL ILLIPCALAA
FLVKPGVSYS TLLVLAAITG IGGGNFASSM TNINAFYPDR LKGWALGLNA GGGNVGVAAV
QLVGLAVLAW SGKGHPGLVA GIYLPLIVVA AAGSALYMDN LPNRRAEKGA IRQVAKRGTT
WAVSVLYIGT FGSFIGFGFA FGQVLQVQFK SEFATPVDAA YLTFLGPLLG SLSRPIGGRL
ADRLGGARVT LVTFALMAAG AGVVLAASHA GSLPAFVTGF VLLFVFSGIG NGSVYKMIPA
LFAGEADADA RRLSGALIGL AGAVGAFGGV LVNMAFRQSF LSTKNGNAAY WTFLLFYALC
AALTWAVFMR RGAGRTRG