| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6147 |
|---|
| Symbol | |
|---|
| ID | 8337510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 7073701 |
|---|
| End bp | 7074435 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644959248 |
|---|
| Product | two component transcriptional regulator, winged helix family |
|---|
| Protein accession | YP_003116842 |
|---|
| Protein GI | 256395278 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.200947 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCA TGCCTGCGAA TATCGCGAAC CCGACGGAAC CCTGGCGCTT CCTGGTCGTC
GACGACGAGC CGGACCTGGT GGAGGTCGTC TGCGGCGCGC TGCGGCACGA GGGCTGGGAC
GCTGTGGGCG CGCACGACGG CCGCGAGGCG GTCTCGGCCG CGGCGACGTA CCAGCCGGAC
GCCGTGGTGC TGGACATGAT GCTGCCCGAC ATGGACGGCA TGGAGGTCAT GCGGCGCATC
CACACCTCCC GCCCCGAGGT GCGGGTACTG TTCTTGACCG CGCGCGACGC CGTGGAGGAC
CGGATCGCCG GGATCGCCGC CGGCGGCGAC GACTACGTGG CCAAGCCGTT CAGCCTGGAC
GAGGTGGTGG TCCGGCTGCG CAGCCTGGTG CGGCGCACCG CGCGCGGGCG CACCGGCCGG
GTCGCGAGCC CGGACTGCCT GGTGGTCGGC GACCTGGTGC TGGACGAGGC GGCCCGGGAG
GTGACCCGCG GCGGTGAGCC GATCGACCTG AGCCCGAAGG AGTTCTCGCT GCTGTGGTTC
CTGATGCGGC ACCCGCGCCA GGTGCTGAGC AAGTCCCAGA TCCTGGCCGA GGTGTGGTCC
TACGACTACG GCGGGCAGGC GCACGTCGTG GAGCTCTACA TCAGCTACCT GCGCAAGAAG
ATCGACGCCG GCCGCCCGGC GATGATCCAC ACGGTGCGCG GCGCCGGCTA CGTCATCAAG
GCCGCCGCTC CATGA
|
|---|
| Protein sequence | MTAMPANIAN PTEPWRFLVV DDEPDLVEVV CGALRHEGWD AVGAHDGREA VSAAATYQPD
AVVLDMMLPD MDGMEVMRRI HTSRPEVRVL FLTARDAVED RIAGIAAGGD DYVAKPFSLD
EVVVRLRSLV RRTARGRTGR VASPDCLVVG DLVLDEAARE VTRGGEPIDL SPKEFSLLWF
LMRHPRQVLS KSQILAEVWS YDYGGQAHVV ELYISYLRKK IDAGRPAMIH TVRGAGYVIK
AAAP
|
|---|
| |