Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_6130 |
Symbol | |
ID | 8337493 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 7054717 |
End bp | 7057158 |
Gene Length | 2442 bp |
Protein Length | 813 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644959231 |
Product | glycoside hydrolase family 3 domain protein |
Protein accession | YP_003116825 |
Protein GI | 256395261 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1472] Beta-glucosidase-related glycosidases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0369131 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00080917 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGGATGCCA AGGCGCTGGC CGGCCTCGTC GGACGCCTCA CGCTCGAGGA GAAGGTCGCG CTGCTGACCG GCGAGGACTT TTGGTCGCTG CGCGCCGTCC CGGAGATCGG GCTGCGCAAG ATCTCGCTGT CGGACGGGCC CGCAGGCGTG CGCGGCACGA CCTGGGACGA GCGCGATCCC TCACTGCTGT TCCCGAACCC GACGGCGCTG GCCGCTACCT GGGACCCCGG ACAGGTGCGG CGTGCCGGGG TGCTGATGGG AGCGCAGGCG CGGGACAAGA GTGTCGCCTG GCACTTGGCG CCGAACGTCA ACTTGCACCG CAGTCCCTTG GGTGGACGGC ATTTCGAGTG CTATTCGGAG GACCCGGTGC TGACCGCGAC GGTCGCCGCG GCGTTCGTCG ACGGAGTGCA GAGCGCGGGC GTCGCCTCGA CCGTCAAGCA CTTCATCGGC AACGAATCCG AGACCGAGCG CATGACCTAC GACGCCGAGA TCGATGAGAC GACGCTGCGC GAGGTGTACC TGCCGCCGTT CGAGGCCGCG GTGCGCGCCG GCGCGTGGTC GGTGATGGCG GCGTACAACT CCGTGGACGG CGTAACCATG ACCGACAACG AGGCGCTGAT CGCCGGGGTG CTCAAGGACG GCTACGGGTT CGACGGCGTG GTCGTGTCCG ACTGGTTCGC CACGCGGTCG GCGGCGGCTT CGGCGAACGC CGGGTTGGAC GTGGTGATGC CCGGTCCTGG TCCGCAGGGA CCGTGGGGCG AGGCGCTGGT GGCGGCCGTG GGCAAGGGCG AGGTCGCTGA ATCAGTGATC GATGACAAGG TGCTGCGACT CCTGCGGCTG GCCGATCGCA CGGGATCCCT GGACGGCTCC GATCCGCTGC CCGCGGTGAG CACGCCGGAC GACGCCGCCG CGCAGCTTCG CGACATTGCG GCGCGCGCCA TGGTGGTGTT GCGCAACGAG GCCTTCGCCG GCGAGCCGTT GCTGCCGCTG AATCCGCATT CGGTCTCGCG GGTGGCGGTC ATCGGGCCGA ACGCCAAGCA TCTGACGGCT CAGGGCGGCG GCTCGGCTCA TGTGAACCCG GCTTACGTCA TCAGCCCTCT GACAGGGCTG ACCGAGGCGT TCGGGCCGAC GGTGACCGTC GAGTACGCCG AAGGCGTGGT CACGCAGCGT CTGCTGCCGC CGCTCACGCC GGAGACCGCG ACCGATCCCG ACACCGGGCA GCCGGGGATG CGCGTGGACT TCATCGATCC GGCGGGCGAC GTGCTGGGCA GCGAGGTGCG GCAGACGTCG CGGTTCGTGT TCATGGGCGG GCTGCCGGTC AGGACCGCCG GGATCCGGGT GCGCGCGGAC GTCGTCCTCG GCGAGGCGGG CAACCATCAG TTCTCGGTGT CCGGGATCGG CGTGTTCCGG CTGGTGATCG GCGACAACGC GCCGATGAAG ATCACGCTGT CCCCGACTGC GGGCGCCGAC CTGACCGAGG GGCTGGTCAG GCCGCCGGAG CACCGGGTCG AGATCGAGAT GGACCCCGGG ACCGTGCGGC TGGAGACGGT CGTGCAGGTC GATCCGGACC TGCCGGTCGC GATGTTCGGA CTGCACCACG GGAGGCCGGA ACCCGGCGAG GAGGAGCTGT TCGCCGCGGC GGTCGCGGCG GCGCACGCCG CCGACGTGGC GATCGTGGTG GTCGGTACGA CCGATGAGGT GGAGAGCGAG GGGTCGGACC GGACCGACCT GAGGCTGCCG GGGCGGCAGG ACGAGCTGGT CGCGGCGGTG GCGCAGGCCA ACCCGCGCAC GATCGTGGTG GTGAACGCCG GGGCGCCGGT GGAGATGCCC TGGCGCGCGC TGACACCGGC GGTGCTGTGG GCGTGGTTCC CGGGGCAGGA GGGTGGGCAC GCCGTCGCCG ACGCGGTGAC CGGCGCGGTC GAGCCCGGCG GGCGGCTGCC CACGACGTTC CCGAAGACCG CCGCCGACGC ACCGGTGTTG TCCACGCGGC CGGTGGACGG GAAGATCGTC TACGCCGAGG GGGCGATGTT CGGGTACCGG GGGTATGAGA AGGCTGAGAT CGTCCCGGCG TACCCCTTCG GCCACGGCTT GGGCTACACC ACCTGGGAGT ACGAGGACAT GACGGCCGCG CCTACCCCAG CCGGCGACAT CGAGCTGGCG GTGCGGGTAC GCAACACCGG CGGGCGGATC GGGCGCGAGG TGGTGCAGGT CTATCTGGCC GGCGAGGGCG ATTGCCCGCA GCGGCTGATC GGTTTCGGCT CGACGTTCGC CGCGCCTAAC GAGATCGCGA CCGTGCCGAT TACCATCCCG GCACGCGTGC TGGCGCGCTG GGACGCGGAG CAGGGGCGGT GGTACGTGCG CGGGGGAGTG CGGGAGCTGA TCGCGGCGCG GTCGGCGTGG GACGCGCGGC TGCGGACGCG GGTGGAGGTG GCGGGTTCTT AG
|
Protein sequence | MDAKALAGLV GRLTLEEKVA LLTGEDFWSL RAVPEIGLRK ISLSDGPAGV RGTTWDERDP SLLFPNPTAL AATWDPGQVR RAGVLMGAQA RDKSVAWHLA PNVNLHRSPL GGRHFECYSE DPVLTATVAA AFVDGVQSAG VASTVKHFIG NESETERMTY DAEIDETTLR EVYLPPFEAA VRAGAWSVMA AYNSVDGVTM TDNEALIAGV LKDGYGFDGV VVSDWFATRS AAASANAGLD VVMPGPGPQG PWGEALVAAV GKGEVAESVI DDKVLRLLRL ADRTGSLDGS DPLPAVSTPD DAAAQLRDIA ARAMVVLRNE AFAGEPLLPL NPHSVSRVAV IGPNAKHLTA QGGGSAHVNP AYVISPLTGL TEAFGPTVTV EYAEGVVTQR LLPPLTPETA TDPDTGQPGM RVDFIDPAGD VLGSEVRQTS RFVFMGGLPV RTAGIRVRAD VVLGEAGNHQ FSVSGIGVFR LVIGDNAPMK ITLSPTAGAD LTEGLVRPPE HRVEIEMDPG TVRLETVVQV DPDLPVAMFG LHHGRPEPGE EELFAAAVAA AHAADVAIVV VGTTDEVESE GSDRTDLRLP GRQDELVAAV AQANPRTIVV VNAGAPVEMP WRALTPAVLW AWFPGQEGGH AVADAVTGAV EPGGRLPTTF PKTAADAPVL STRPVDGKIV YAEGAMFGYR GYEKAEIVPA YPFGHGLGYT TWEYEDMTAA PTPAGDIELA VRVRNTGGRI GREVVQVYLA GEGDCPQRLI GFGSTFAAPN EIATVPITIP ARVLARWDAE QGRWYVRGGV RELIAARSAW DARLRTRVEV AGS
|
| |