Gene Caci_6130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6130 
Symbol 
ID8337493 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp7054717 
End bp7057158 
Gene Length2442 bp 
Protein Length813 aa 
Translation table11 
GC content71% 
IMG OID644959231 
Productglycoside hydrolase family 3 domain protein 
Protein accessionYP_003116825 
Protein GI256395261 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1472] Beta-glucosidase-related glycosidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0369131 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00080917 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGATGCCA AGGCGCTGGC CGGCCTCGTC GGACGCCTCA CGCTCGAGGA GAAGGTCGCG 
CTGCTGACCG GCGAGGACTT TTGGTCGCTG CGCGCCGTCC CGGAGATCGG GCTGCGCAAG
ATCTCGCTGT CGGACGGGCC CGCAGGCGTG CGCGGCACGA CCTGGGACGA GCGCGATCCC
TCACTGCTGT TCCCGAACCC GACGGCGCTG GCCGCTACCT GGGACCCCGG ACAGGTGCGG
CGTGCCGGGG TGCTGATGGG AGCGCAGGCG CGGGACAAGA GTGTCGCCTG GCACTTGGCG
CCGAACGTCA ACTTGCACCG CAGTCCCTTG GGTGGACGGC ATTTCGAGTG CTATTCGGAG
GACCCGGTGC TGACCGCGAC GGTCGCCGCG GCGTTCGTCG ACGGAGTGCA GAGCGCGGGC
GTCGCCTCGA CCGTCAAGCA CTTCATCGGC AACGAATCCG AGACCGAGCG CATGACCTAC
GACGCCGAGA TCGATGAGAC GACGCTGCGC GAGGTGTACC TGCCGCCGTT CGAGGCCGCG
GTGCGCGCCG GCGCGTGGTC GGTGATGGCG GCGTACAACT CCGTGGACGG CGTAACCATG
ACCGACAACG AGGCGCTGAT CGCCGGGGTG CTCAAGGACG GCTACGGGTT CGACGGCGTG
GTCGTGTCCG ACTGGTTCGC CACGCGGTCG GCGGCGGCTT CGGCGAACGC CGGGTTGGAC
GTGGTGATGC CCGGTCCTGG TCCGCAGGGA CCGTGGGGCG AGGCGCTGGT GGCGGCCGTG
GGCAAGGGCG AGGTCGCTGA ATCAGTGATC GATGACAAGG TGCTGCGACT CCTGCGGCTG
GCCGATCGCA CGGGATCCCT GGACGGCTCC GATCCGCTGC CCGCGGTGAG CACGCCGGAC
GACGCCGCCG CGCAGCTTCG CGACATTGCG GCGCGCGCCA TGGTGGTGTT GCGCAACGAG
GCCTTCGCCG GCGAGCCGTT GCTGCCGCTG AATCCGCATT CGGTCTCGCG GGTGGCGGTC
ATCGGGCCGA ACGCCAAGCA TCTGACGGCT CAGGGCGGCG GCTCGGCTCA TGTGAACCCG
GCTTACGTCA TCAGCCCTCT GACAGGGCTG ACCGAGGCGT TCGGGCCGAC GGTGACCGTC
GAGTACGCCG AAGGCGTGGT CACGCAGCGT CTGCTGCCGC CGCTCACGCC GGAGACCGCG
ACCGATCCCG ACACCGGGCA GCCGGGGATG CGCGTGGACT TCATCGATCC GGCGGGCGAC
GTGCTGGGCA GCGAGGTGCG GCAGACGTCG CGGTTCGTGT TCATGGGCGG GCTGCCGGTC
AGGACCGCCG GGATCCGGGT GCGCGCGGAC GTCGTCCTCG GCGAGGCGGG CAACCATCAG
TTCTCGGTGT CCGGGATCGG CGTGTTCCGG CTGGTGATCG GCGACAACGC GCCGATGAAG
ATCACGCTGT CCCCGACTGC GGGCGCCGAC CTGACCGAGG GGCTGGTCAG GCCGCCGGAG
CACCGGGTCG AGATCGAGAT GGACCCCGGG ACCGTGCGGC TGGAGACGGT CGTGCAGGTC
GATCCGGACC TGCCGGTCGC GATGTTCGGA CTGCACCACG GGAGGCCGGA ACCCGGCGAG
GAGGAGCTGT TCGCCGCGGC GGTCGCGGCG GCGCACGCCG CCGACGTGGC GATCGTGGTG
GTCGGTACGA CCGATGAGGT GGAGAGCGAG GGGTCGGACC GGACCGACCT GAGGCTGCCG
GGGCGGCAGG ACGAGCTGGT CGCGGCGGTG GCGCAGGCCA ACCCGCGCAC GATCGTGGTG
GTGAACGCCG GGGCGCCGGT GGAGATGCCC TGGCGCGCGC TGACACCGGC GGTGCTGTGG
GCGTGGTTCC CGGGGCAGGA GGGTGGGCAC GCCGTCGCCG ACGCGGTGAC CGGCGCGGTC
GAGCCCGGCG GGCGGCTGCC CACGACGTTC CCGAAGACCG CCGCCGACGC ACCGGTGTTG
TCCACGCGGC CGGTGGACGG GAAGATCGTC TACGCCGAGG GGGCGATGTT CGGGTACCGG
GGGTATGAGA AGGCTGAGAT CGTCCCGGCG TACCCCTTCG GCCACGGCTT GGGCTACACC
ACCTGGGAGT ACGAGGACAT GACGGCCGCG CCTACCCCAG CCGGCGACAT CGAGCTGGCG
GTGCGGGTAC GCAACACCGG CGGGCGGATC GGGCGCGAGG TGGTGCAGGT CTATCTGGCC
GGCGAGGGCG ATTGCCCGCA GCGGCTGATC GGTTTCGGCT CGACGTTCGC CGCGCCTAAC
GAGATCGCGA CCGTGCCGAT TACCATCCCG GCACGCGTGC TGGCGCGCTG GGACGCGGAG
CAGGGGCGGT GGTACGTGCG CGGGGGAGTG CGGGAGCTGA TCGCGGCGCG GTCGGCGTGG
GACGCGCGGC TGCGGACGCG GGTGGAGGTG GCGGGTTCTT AG
 
Protein sequence
MDAKALAGLV GRLTLEEKVA LLTGEDFWSL RAVPEIGLRK ISLSDGPAGV RGTTWDERDP 
SLLFPNPTAL AATWDPGQVR RAGVLMGAQA RDKSVAWHLA PNVNLHRSPL GGRHFECYSE
DPVLTATVAA AFVDGVQSAG VASTVKHFIG NESETERMTY DAEIDETTLR EVYLPPFEAA
VRAGAWSVMA AYNSVDGVTM TDNEALIAGV LKDGYGFDGV VVSDWFATRS AAASANAGLD
VVMPGPGPQG PWGEALVAAV GKGEVAESVI DDKVLRLLRL ADRTGSLDGS DPLPAVSTPD
DAAAQLRDIA ARAMVVLRNE AFAGEPLLPL NPHSVSRVAV IGPNAKHLTA QGGGSAHVNP
AYVISPLTGL TEAFGPTVTV EYAEGVVTQR LLPPLTPETA TDPDTGQPGM RVDFIDPAGD
VLGSEVRQTS RFVFMGGLPV RTAGIRVRAD VVLGEAGNHQ FSVSGIGVFR LVIGDNAPMK
ITLSPTAGAD LTEGLVRPPE HRVEIEMDPG TVRLETVVQV DPDLPVAMFG LHHGRPEPGE
EELFAAAVAA AHAADVAIVV VGTTDEVESE GSDRTDLRLP GRQDELVAAV AQANPRTIVV
VNAGAPVEMP WRALTPAVLW AWFPGQEGGH AVADAVTGAV EPGGRLPTTF PKTAADAPVL
STRPVDGKIV YAEGAMFGYR GYEKAEIVPA YPFGHGLGYT TWEYEDMTAA PTPAGDIELA
VRVRNTGGRI GREVVQVYLA GEGDCPQRLI GFGSTFAAPN EIATVPITIP ARVLARWDAE
QGRWYVRGGV RELIAARSAW DARLRTRVEV AGS