| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6117 |
|---|
| Symbol | |
|---|
| ID | 8337480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 7039912 |
|---|
| End bp | 7040805 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644959219 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003116813 |
|---|
| Protein GI | 256395249 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.939175 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0684426 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGCA CCCGAGGCTG GGCCGAGTAC TGGCGCGACG ACTCCCGCGG CCTGGAAGCC
ATGCACGCGC GCTTCCGCGA CCACGTGTAC GCCCCGCACT CGCACGACGC CTACTCCTTC
GGCGTCACCG ACGCCGGCGC GCAGCAGTTC CACTGCCGCG GAGGCCTGCA CACCAGCGCC
GCCGGCATGG TGATGGTGCT GAACCCCGAC GATCCGCACG ACGGCCGCGC CGCCGCCGAC
CTCGGCTACC ACTACCGCAT CGTGCACGTC TCGCCGCAGA TCGTGCGTGC GGTGCTGGCC
GACGCCGCGG ATCTGACCGA CCATGCCGAT CCGCTGGAGG TCGCTGCTTC CTCCGCCTCC
GCTTTCGCCG GCTCCGCCGT TCCCCTGCCG TTGTTCACCC GACCGGTCCT CGGCGATCGC
CGGCTCGCCG ACGCCATCGC CGGCCTGCAC GCCGCGCTGG CTGCCGACGC CAGTCCGCTG
GCGCGTGACG AGCGTTTGCG CGCGGTGATC CTCGGCGCAC ACCTTCGCGG CGCTACTCGT
CCGCCGCGTA TCAGGACTCT GAATGACGGC GCGCAGCGAG AGGCGGCACA CCGTGCCAGG
ACTCTGATGC GCGAGGCGTA TCCGGAGCCG CTGCCGGTGG AAGTGATCGC CGAAGCCGCC
GGGTGCAGCA GGTTCGCGCT CTACCGCGCC TTCTCCGCCG AGTTCGGCAT GTCCCCCAGC
GACTACGAGC GCCAGCTCCG GCTGCGCCAC GCGCGCTCGT TGCTGGCCGC CGGCAGCGCG
CCGGCCGACG TCGCGGCGGC CACCGGCTTC GCCGACCAGG CGCATCTGGC GCGCTGGTTC
AAGCGCGCGT ACGGCATCAC GCCGGGCGTC TTCGCGCGCG GCTCGGGGAG CTGA
|
|---|
| Protein sequence | MAGTRGWAEY WRDDSRGLEA MHARFRDHVY APHSHDAYSF GVTDAGAQQF HCRGGLHTSA
AGMVMVLNPD DPHDGRAAAD LGYHYRIVHV SPQIVRAVLA DAADLTDHAD PLEVAASSAS
AFAGSAVPLP LFTRPVLGDR RLADAIAGLH AALAADASPL ARDERLRAVI LGAHLRGATR
PPRIRTLNDG AQREAAHRAR TLMREAYPEP LPVEVIAEAA GCSRFALYRA FSAEFGMSPS
DYERQLRLRH ARSLLAAGSA PADVAAATGF ADQAHLARWF KRAYGITPGV FARGSGS
|
|---|
| |