| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6097 |
|---|
| Symbol | |
|---|
| ID | 8337460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 7017968 |
|---|
| End bp | 7018726 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644959199 |
|---|
| Product | Rhomboid family protein |
|---|
| Protein accession | YP_003116793 |
|---|
| Protein GI | 256395229 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0830001 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCCGGA CATCCGTCGT CACCTTCGGC CTGATCATCG CGAACGTGGC GGTGTTCCTG
TCCGGCCCGA TCGCGTTCGC CGGCGTCAGC CCGGACGCGG CGCGCAAGGC CAGGGAGAAC
GCGTACCTGT ACCACTACGG CGCGATCCCG GCCCAGCTGC TGAACGGCCA CGGCAACCCG
GTCTGGCCGG TGTTCACCGC CATGTTCGTG CACGCCGGCT GGATCCACCT GCTGGGGAAC
ATGCTGTTCC TCTACATCTT CGGCAACAAC GTCGAGGACG TCTTGGGGCG CCTGCACTTC
CTGGCGTTCT ACATCATCGG CGGCGCGGCC AGCACCTACG CCTTCGCCTG GGCGAACCCG
ACGGCCACCG GGCCGCTGGT CGGCGCCTCG GGGGCGATCG CAGCGGTGCT AGGGGCGTAC
GTCTACCTGT TCCCACAGGC GAGGGTCACC TTGCTGGTGC CGTTCCTGTG GTTCCTGCCG
ATGCGGGTCC CGGCGTGGCT GGTCCTGGGT TTCTGGTTCG TGGTGCAGCT GCCGGAGTTC
CAGCAGACCA TCGGAGTGGC CGGCTCCACG GACGTCGCGT ACTTCGCCCA CGTATCGGGG
TTCGTCTTGG GACTCCTCTA CGTAGCCCTT GTCATCGGCC GGGGACCCAG CGATCCGGCC
CGCGCCCCGG CCACCGAAAC CCTGCCTCCC CCGCCGCCGC TGATGCCGGA CTACCGCTCC
GCCGATCCGG ACGATCCCTA CGGCCAATAC CATCGCTAG
|
|---|
| Protein sequence | MSRTSVVTFG LIIANVAVFL SGPIAFAGVS PDAARKAREN AYLYHYGAIP AQLLNGHGNP
VWPVFTAMFV HAGWIHLLGN MLFLYIFGNN VEDVLGRLHF LAFYIIGGAA STYAFAWANP
TATGPLVGAS GAIAAVLGAY VYLFPQARVT LLVPFLWFLP MRVPAWLVLG FWFVVQLPEF
QQTIGVAGST DVAYFAHVSG FVLGLLYVAL VIGRGPSDPA RAPATETLPP PPPLMPDYRS
ADPDDPYGQY HR
|
|---|
| |