| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6086 |
|---|
| Symbol | |
|---|
| ID | 8337449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 7008073 |
|---|
| End bp | 7008768 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644959189 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003116783 |
|---|
| Protein GI | 256395219 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0836078 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATCA TCTTCATCAC CGGGGCGAAC AAGGGACTCG GCCACGAGGC GGCCCGGCGC
CTCATCGGGC TCCGACACAC GGTGCTGCTC GGGGCACGCG ACGCGGCGCA GGGGCGGAAA
GCCGCCGACG CGCTCGGCGC GCGCTTCGTG CGGATCGACG TGACCGACGA CGCCTCGGTC
GCGGCCGCCG CCGCGGACGT GGCCGACCAC GAGGGCCGGA TCGACGTGCT GGTCAACAAC
GCCGGGATCC ACGGTCCATC CGGCGATCCG GGGTCTCTCA CCGGCGCCGA CGCGCTCGGG
GTGTTCGACA CGAACGTGGC CGGGGTGGTG CGGGTGACCT CGGCGTTCCT GCCGCTGCTC
GGCGCGTCGG AGGATCCGGC GATCGTCAAC GTCAGCAGCG GTATGGGATC GCTGGCCTTC
ACCCACGACC CGGAGCGGGT CGAGTCGAAG GTCGTCGCGC CGCTCTACAG CGCCTCGAAG
GCCGCGCTGA CGATGCTCAC CACGCAGTAC GCGAAGGCGC TGCCGGGCAT CCGGGTCAAC
GCCGCCGACC CCGGCTACAC GGCGACGGAT CTCAACGGCA ACCGGGGCAC GCAGACCGTC
ACCGAGGGGA CGGACGCGAT CGTCGCGCTG GCCACCGAGG GACCGGGCGC CGCCTCCGGG
CGGTTCGTGG ACCGCGGCGG CGACATCGGC TGGTGA
|
|---|
| Protein sequence | MAIIFITGAN KGLGHEAARR LIGLRHTVLL GARDAAQGRK AADALGARFV RIDVTDDASV
AAAAADVADH EGRIDVLVNN AGIHGPSGDP GSLTGADALG VFDTNVAGVV RVTSAFLPLL
GASEDPAIVN VSSGMGSLAF THDPERVESK VVAPLYSASK AALTMLTTQY AKALPGIRVN
AADPGYTATD LNGNRGTQTV TEGTDAIVAL ATEGPGAASG RFVDRGGDIG W
|
|---|
| |